Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07400 853 / 0 FHA forkhead-associated domain-containing protein / FHA domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043015 [exp] 1247 / 0 AT5G07400 608 / 0.0 forkhead-associated domain-containing protein / FHA domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G111800 [exp] 1047 / 0 AT5G07400 881 / 0.0 forkhead-associated domain-containing protein / FHA domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08797 [flax] [poplar] HIRAN HIRAN domain CL0357 [flax] [poplar] SMAD-FHA PF00498 [flax] [poplar] FHA FHA domain CL0479 [flax] [poplar] PLD PF06087 [flax] [poplar] Tyr-DNA_phospho Tyrosyl-DNA phosphodiesterase
Representative CDS sequence Show only first row Show all	>Lus10032515 pacid=23146312 polypeptide=Lus10032515 locus=Lus10032515.g ID=Lus10032515.BGIv1.0 annot-version=v1.0 ATGGGCGGCTTAGCTCTCACCAGTAGCGACAGAGGAATCGATGGTGTGGAGGGGGCGGAGGAGAATGTTCTATTCCGGCTCTCAGTTTCACCTCCGAGGA AGAGGCAGAAGCAAATCCGCAAATCAGCACTGCTCCATCTCCGAAGTTTTGACGTCCCTCTGACTTCCGCCGCCACCGGTTCGATTCTCACTTCAATCCG TCTCTTAGCCGACCGGCCTTACACCTTCGGTCGAGCGTCCGGCCACTGCAACTTCCTCCTCCACGATTCCCGTGTCAGCAAGCGACACTGCCAGCTTATG TTCGACGGTCTTCATCGTAAGGTTTATGTTCTCGATGGCTCGTTTCTGTTTCCGAATGCTCAATCTTCTGTTAGCGAGTTTAGGAGGAGACTGCACTGTT CTGATCAGTTGAGAGAAGACTGTTATGGGATACAGAATTCTCTTAATGGATTGTTTCTTAATGGTGTTAGGGTTGGGGCAGGTGTGGTTAGAGAGCTCTG CGCAGGTGATCAGGTGTTTTTTGTTTGTGGAAATGAAGATGTATGTAGGTTCAGTAAACGAGTTGGGTTCATGATTGAGGGCGTTGTGTTGACTGAGGAA GTTGTAGTGGGAGTGGGTGGGGTTCCTTTTGGGAGGTCCAGGAGGTTAGTTGAGAAGACTGATTCAATGGGGCACTCTCAAAGTTCATTGTCAAGTGGGA GGAGAAACAAAAGGGTCTTTGCTTTTTGTCAAGATGAGATAGTGTCTCCACCCAAAGCTTCTTTGACATTGACATATGGCGGTATTGCAAGAAGAGCAAA GTCTTTGTTGACCAAATGTATGCGTATATTGCACAGTGATGACCCAATGGCTTATATTAGGAAACTTGTTTTACCGGAGATGGAGATGAATTCTCCATGG TGTGGTAAGAATGGATCGAGCTCCCCACAATCTATGAACCTACGTGGCGCGAATTTGGATGTTACGATAGGTGGGACTGAAGATCACAGTGGCGAGCAAC ATTTCCTGGAGCCTCCGTCTGCTCATGAGAGTAAGCAACTTAGTGAAAGAAAGGAGAGCGTGCAATGTGTCAGTGTTAGAGATGACGAAATGCACGAAAT AGATGGTATGACAAGACCTTTCCAGACCATTACCGTGAATGCTACTTGTGGTGTTCCTTCGCCGTGTACTGTTAATGAGGACAGTAATAGCTTGGTCCAG CCTGTTGTCCCTGTGGAAACTTCAGAAGATCAAAGTTCTCCCCCTGGGAAGAAATTCTTTCTTAACCGTCTTGAGCGTATGAACCATCCTTCATCTACAC ATCACAACACGGTCTCTATGTCAGAACTTCTCTATCCTGTTAACAACATTCTGAGAATATTTATTGCTACGTTCACAAGTGATATCCTATGGTTCTTAAA GTCGTGTGGAATTCCATACCAACTTCCAGTGACAATTGCATGTCATGACACAGAAAGATGTTGGAGCTCCAGCCCTGAGAAAAGATCCTCAATGCCTTAC CCAGAGTATCCAAATGTAGAATTAGTGTTTCCTCCATTTCCCGAAGATATAGCATTTGGTAAAGACCTAAAGAGCAAAGGCATCGGTTGCCATCATCCAA AACTGATTGTTTTGCAAAGAGATGATAGCCTTCGTGTTATCATTACTTCAGCGAATCTAAATGCTAACCAGTGGAATAATGTAACCAACACTGTTTGGTG GCAAGACTTTCCTGCCAGAAGCGCACCTGATGCCTCGTATCTTTTTAGACGAATGTCCGTCGGAGAATCAAATCAATTGTCTTCAGACTTTGCTGCTGAG CTGGCCAGATTTATGGCGTCTCTTGTTATTGATGTTCCTAGTCAAGCACATTGGATTGCCGAGCTGACAAGATACAACTTTGAAGGGGCAGTAGGACGTA TAGTGGCTTCAATACCTGGAATTCACTCTTACAAGGCACAGAATACTTCTCGGTGTAACCTGGTCTCACCTGTTATGGGTTCTTTAGGGTGGGCTGAAGC TTCTGTAGTTGGTTTAAGTCATCTTTTCCATGCTAGGTCAGACGTCAAAGGCATCCAGCTGAAGAGATTAGCTGCTTTTCTTAGTCGAACTTATGAAAAT GCAGATGGGATGTCTAAGGTTGTTTTGAGAAGAAACACGAGTGTGGTGGCAGATGGAAATGCTGTCAGTGTTCTTGTTTCTAATCCTGATCAAACATCTG AAGGAGATTGCATTCAACTTGGTTTTCTGCCTAGAGGTGTTGCAAAATGGGTGTCACCATTGTGGGATGGTGGATTCTTCTCTTTCTCAGGATTTGTTTC TCGTAAAGAAGCCCTTGCTGCTGCTTTAGGAGGAAGCAGCATTAGATTGCAACTGAGTCTGTATGTGACACAAGGACCTCAATTTTCAGAGATGATGAAG CTACTGCAGTTTGAACATGTAGTTGCTCTTAGTTCTCTCATTGCTTCACTACAGAGTTGTACAGGCCTTTGGCGTCTAGAGGAGGTGTTAGGTCAATACA AATGGCCCGAGTCAGAACAATCCGATTTCATTTACGGTGCATCTTCGATCGGGTCATCAGTCAATGCACAATTTATCTCTGCCTTTTCAGTCGCCGCTGG AAAAAAATCTTCGCACGTTGTTGATTCTGAAGAATCTGATCCTGAGTGGGGCTGCTGGAGTGCTAGTCAAGAATTGAGAAATCCGTCCATGCAGATACTT TTCCCTACGATCGACAGAGTAAAAACCGGACATGACCGCGTCGTATCATCAAGACGCATTCTCTGCTTCTCGGAGAAAACATGGCAGAAGTTGCAAACTG CAAACATACTTCATGATGCCGTACCGCATCCTCCTGAGAGGATCGGACACCCAATGCACGTCAAGGTTGCAAGGAGACGCTTCAGGAGTGGAACAAGGGG GGAACCTTCAATCGGGTGGGTGTATTGCGGGTCGCATAATTTCAGCGCTGCGGCTTGGGGACGAACAATCTCGAACCCATCTTCTTCGAAGCTTCACATT TGCAACTACGAACTCGGGATAGTCTTCGTCTTTCCTCCATCGGAGCGAGATGGCCACTCGAAGGAGGACAAGGGAAGCTTGGATGACATCGTTTTGCCAT TCGCTACACCAGCTCCGAAATATAGGCCAACCGACAGGCCAGCAACAGGTCGAGCTATGAGAGAGGCTATGTCGAAGCTTGCTGATGAAGCGAGACGAGT GGGTGAAGAAGAGTTGGGGAACGTGGAAGAAGAAATGGAGGAGGAGGTTCCTGATGAAGAAGAGGAAGATGTGGAGGAGGTAAGTACGTGTGTATTGGAG GAGGAGGAGAAGGAAGAAGAGAAGGCGTATGCTGAGATGCTGTGGATTCAAGTGGACTCATCTCAGAGCTCTTGA
AA sequence Show only first row Show all	>Lus10032515 pacid=23146312 polypeptide=Lus10032515 locus=Lus10032515.g ID=Lus10032515.BGIv1.0 annot-version=v1.0 MGGLALTSSDRGIDGVEGAEENVLFRLSVSPPRKRQKQIRKSALLHLRSFDVPLTSAATGSILTSIRLLADRPYTFGRASGHCNFLLHDSRVSKRHCQLM FDGLHRKVYVLDGSFLFPNAQSSVSEFRRRLHCSDQLREDCYGIQNSLNGLFLNGVRVGAGVVRELCAGDQVFFVCGNEDVCRFSKRVGFMIEGVVLTEE VVVGVGGVPFGRSRRLVEKTDSMGHSQSSLSSGRRNKRVFAFCQDEIVSPPKASLTLTYGGIARRAKSLLTKCMRILHSDDPMAYIRKLVLPEMEMNSPW CGKNGSSSPQSMNLRGANLDVTIGGTEDHSGEQHFLEPPSAHESKQLSERKESVQCVSVRDDEMHEIDGMTRPFQTITVNATCGVPSPCTVNEDSNSLVQ PVVPVETSEDQSSPPGKKFFLNRLERMNHPSSTHHNTVSMSELLYPVNNILRIFIATFTSDILWFLKSCGIPYQLPVTIACHDTERCWSSSPEKRSSMPY PEYPNVELVFPPFPEDIAFGKDLKSKGIGCHHPKLIVLQRDDSLRVIITSANLNANQWNNVTNTVWWQDFPARSAPDASYLFRRMSVGESNQLSSDFAAE LARFMASLVIDVPSQAHWIAELTRYNFEGAVGRIVASIPGIHSYKAQNTSRCNLVSPVMGSLGWAEASVVGLSHLFHARSDVKGIQLKRLAAFLSRTYEN ADGMSKVVLRRNTSVVADGNAVSVLVSNPDQTSEGDCIQLGFLPRGVAKWVSPLWDGGFFSFSGFVSRKEALAAALGGSSIRLQLSLYVTQGPQFSEMMK LLQFEHVVALSSLIASLQSCTGLWRLEEVLGQYKWPESEQSDFIYGASSIGSSVNAQFISAFSVAAGKKSSHVVDSEESDPEWGCWSASQELRNPSMQIL FPTIDRVKTGHDRVVSSRRILCFSEKTWQKLQTANILHDAVPHPPERIGHPMHVKVARRRFRSGTRGEPSIGWVYCGSHNFSAAAWGRTISNPSSSKLHI CNYELGIVFVFPPSERDGHSKEDKGSLDDIVLPFATPAPKYRPTDRPATGRAMREAMSKLADEARRVGEEELGNVEEEMEEEVPDEEEEDVEEVSTCVLE EEEKEEEKAYAEMLWIQVDSSQSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07400	FHA		forkhead-associated domain-con...		Lus10032515 [exp]	0	1
AT3G54670		ATSMC1, TTN8	TITAN8, STRUCTURAL MAINTENANCE...		Lus10022923 [exp]	5.3	0.7968
AT3G21290			dentin sialophosphoprotein-rel...		Lus10037611 [exp]	14.3	0.7404
					Lus10021411 [exp]	15.4	0.7743
AT1G69290			Pentatricopeptide repeat (PPR)...		Lus10037077 [exp]	15.9	0.7719
AT1G72390			unknown protein		Lus10008132 [exp]	16.4	0.7206
AT1G67500		ATREV3	recovery protein 3 (.1.2)		Lus10029911 [exp]	17.9	0.7582
AT3G06670			binding (.1.2)		Lus10037742 [exp]	30.9	0.7371
AT4G32010	B3	HSL1, HSI2-L1, ...	VP1/ABI3-LIKE 2, HSI2-like 1 (...		Lus10018440 [exp]	32.6	0.7276
AT4G02390		ATPARP1, APP	POLY\(ADP-RIBOSE\) POLYMERASE ...		Lus10030363 [exp]	40.3	0.7068
AT3G21290			dentin sialophosphoprotein-rel...		Lus10006871 [exp]	41.2	0.7073

Compare expression of checked genes

Lus10032515 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.