Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56860 353 / 1e-118 UBA2A UBP1-associated protein 2A (.1.2.3.4.5) AT2G41060 329 / 2e-109 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G15010 185 / 2e-54 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT2G22090 134 / 1e-35 UBA1A RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT2G19380 119 / 4e-29 RNA recognition motif (RRM)-containing protein (.1) AT2G22100 113 / 9e-28 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G76460 83 / 1e-17 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G20880 82 / 1e-17 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G22330 80 / 1e-16 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G17640 81 / 2e-16 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043016 [exp] 498 / 4e-175 AT3G56860 463 / 1e-160 UBP1-associated protein 2A (.1.2.3.4.5) Lus10025418 [exp] 176 / 7e-51 AT3G15010 336 / 8e-113 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10015290 [exp] 170 / 1e-48 AT3G15010 335 / 2e-112 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10023817 [exp] 159 / 9e-45 AT3G15010 188 / 5e-56 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10021035 [exp] 151 / 6e-40 AT3G15010 182 / 4e-51 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10043168 [exp] 83 / 5e-17 AT3G07810 456 / 2e-157 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10032579 [exp] 82 / 8e-17 AT3G07810 447 / 8e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10002684 [exp] 81 / 1e-16 AT2G46780 228 / 1e-72 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10030202 [exp] 81 / 2e-16 AT2G46780 224 / 2e-71 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G023800 [exp] 384 / 8e-131 AT3G56860 348 / 1e-115 UBP1-associated protein 2A (.1.2.3.4.5) Potri.006G025600 [exp] 348 / 1e-116 AT3G56860 353 / 2e-117 UBP1-associated protein 2A (.1.2.3.4.5) Potri.001G220600 [exp] 230 / 8e-71 AT3G56860 232 / 1e-70 UBP1-associated protein 2A (.1.2.3.4.5) Potri.005G081600 [exp] 217 / 9e-67 AT2G41060 213 / 8e-65 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G377400 [exp] 186 / 4e-54 AT3G15010 342 / 2e-114 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.004G055400 [exp] 182 / 3e-53 AT3G15010 303 / 2e-100 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.011G065200 [exp] 181 / 3e-53 AT3G15010 295 / 1e-97 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.016G048100 [exp] 167 / 5e-48 AT3G15010 181 / 1e-53 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.006G190900 [exp] 165 / 2e-47 AT3G15010 179 / 6e-53 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G361300 [exp] 85 / 1e-17 AT3G07810 433 / 1e-148 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10032516 pacid=23146339 polypeptide=Lus10032516 locus=Lus10032516.g ID=Lus10032516.BGIv1.0 annot-version=v1.0 ATGGCGAGGAAGCGAAAGGTTGTTCCTGCTACAGGCGCTGAATCGTCAGGACCGTCGAAGAAACAGCAGCTGGAGCAGCAACAATTGCAACATCAGAAGC AGCTGGAAGAAGAAGAGGCGAAGAAGATCAAACAGGAAGAGGAGGTAATCGAAGAGGTTGAGGAGGATGTAGAGGAAGAGGAAGTGGAGGAAGAAGTAGA GGAGGAGGAGGAGGAAGAGGAAGAGGAGGAGGACGGCAGTAAAGAAGATCTGAACAACGGAGGAAATAAGCAGATTGTTTCTTCTTCTGCCGCACCCGCG TCGGTTCCCGATGACGACGATGAGGAGCCGATAGATAAACTTCTGGAGCCGTTTAGCAAAGATCAGCTCGTTAATTTGCTACGCGAGGCCGCTGAGGTCC ATCGAGACGTGGCCGATCGCATCCGTAGGATAGCTGACGAGGATCCCGTTCATCGGAAGATCTTCGTCCATGGCCTGGGTTGGGACACCACCGCGGAGAC GCTGGTTAGCGCGTTCAAGCAGTATGGAGAGATCGAGGATTGCAAGGCCGTGACCGACAAGGTGTCTGGAAAATCCAAGGGTTACGGTTTCATTCTGTTC AAGAGGCGAAGTGGAGCCAGGAAGGCGCTTAGGGAGCCACAGAAGAAGATAGGCAGCCGCATGACTGCTTGTCAGCTTGCTTCTATTGGCCCTGTTCAAA CGCCACCTCAAGCAGCAGCTCCCGTTACACCGCAGTCAGAATACACTCAGAGGAAGATCTACGTGAGTAACGTCGGTTCAGATTTGGATCCCCAAAAGTT GACTAGCTTCTTTGCAAAGTTTGGAGAGATTGAGGAAGGGCCACTTGGGCTGGATAAGAACACCGGAAAGCCGAAAGGTTTCTGTTTGTTTGTCTACAGG AGCCCTGAAAGTGCTAAGAGGGCTCTTGAAGAGCCGCATAAGAACTTCGATGGTCATATTTTACACTGCCAGAAAGCCATTGACGGTCCGAAACCTGGAA AAGCTCCGCAACAGAGGCAGCAACACCATCATGCTCAGGCCTCTCATTATCCGAGGAATGATAGCAACACTCCATATGCCGCTGCAGCTCCTAGCCACCT AATGGGCCCCGCAAGTGGAGCTGGAATGGGATTTAACCAGGGAGCTGCTGCGGCACAAGCAATTAACCCTCTTGGACAAGCTCTAACAGCAGAGGAAAAC GCGGACAGTATGGTGGTTTAG
AA sequence Show only first row Show all	>Lus10032516 pacid=23146339 polypeptide=Lus10032516 locus=Lus10032516.g ID=Lus10032516.BGIv1.0 annot-version=v1.0 MARKRKVVPATGAESSGPSKKQQLEQQQLQHQKQLEEEEAKKIKQEEEVIEEVEEDVEEEEVEEEVEEEEEEEEEEEDGSKEDLNNGGNKQIVSSSAAPA SVPDDDDEEPIDKLLEPFSKDQLVNLLREAAEVHRDVADRIRRIADEDPVHRKIFVHGLGWDTTAETLVSAFKQYGEIEDCKAVTDKVSGKSKGYGFILF KRRSGARKALREPQKKIGSRMTACQLASIGPVQTPPQAAAPVTPQSEYTQRKIYVSNVGSDLDPQKLTSFFAKFGEIEEGPLGLDKNTGKPKGFCLFVYR SPESAKRALEEPHKNFDGHILHCQKAIDGPKPGKAPQQRQQHHHAQASHYPRNDSNTPYAAAAPSHLMGPASGAGMGFNQGAAAAQAINPLGQALTAEEN ADSMVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56860		UBA2A	UBP1-associated protein 2A (.1...		Lus10032516 [exp]	0	1
AT3G48050		SUO	'shuttle' in chinese, BAH doma...		Lus10042137 [exp]	4.2	0.9140
AT1G79090			unknown protein		Lus10031210 [exp]	5.0	0.8983
AT3G27700	C3HZnF		zinc finger (CCCH-type) family...		Lus10014548 [exp]	5.3	0.9099
AT3G12640			RNA binding (RRM/RBD/RNP motif...		Lus10037701 [exp]	6.0	0.9048
AT5G49580			Chaperone DnaJ-domain superfam...		Lus10017085 [exp]	7.1	0.8677
AT3G02890			RING/FYVE/PHD zinc finger supe...		Lus10020350 [exp]	10.5	0.8759
AT3G52250	MYB		Duplicated homeodomain-like su...		Lus10036515 [exp]	10.9	0.8875
AT4G01000			Ubiquitin-like superfamily pro...		Lus10010125 [exp]	11.8	0.8565
AT3G18440		ATALMT9	aluminum-activated malate tran...		Lus10039926 [exp]	13.0	0.8594
AT5G22760			PHD finger family protein (.1)		Lus10020532 [exp]	14.6	0.8988

Compare expression of checked genes

Lus10032516 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.