Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47910 1185 / 0 ATRBOHD, RBOHD respiratory burst oxidase homologue D (.1) AT5G51060 1167 / 0 ATRBOHC, RHD2 ROOT HAIR DEFECTIVE 2, A. THALIANA RESPIRATORY BURST OXIDASE HOMOLOG C, NADPH/respiratory burst oxidase protein D (.1) AT5G07390 1092 / 0 ATRBOHA respiratory burst oxidase homolog A (.1.2) AT4G25090 1029 / 0 Riboflavin synthase-like superfamily protein (.1.2) AT1G09090 954 / 0 ATRBOHB-BETA, ATRBOHB respiratory burst oxidase homolog B (.1.2) AT1G64060 918 / 0 RBOHAP108, ATRBOHF ,ATRBOH F ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) AT1G19230 805 / 0 Riboflavin synthase-like superfamily protein (.1.2) AT4G11230 781 / 0 Riboflavin synthase-like superfamily protein (.1) AT5G60010 766 / 0 ferric reductase-like transmembrane component family protein (.1) AT3G45810 556 / 0 ferric reductase-like transmembrane component family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043017 [exp] 1740 / 0 AT5G47910 1276 / 0.0 respiratory burst oxidase homologue D (.1) Lus10022434 [exp] 1549 / 0 AT5G51060 1276 / 0.0 ROOT HAIR DEFECTIVE 2, A. THALIANA RESPIRATORY BURST OXIDASE HOMOLOG C, NADPH/respiratory burst oxidase protein D (.1) Lus10029896 [exp] 1076 / 0 AT1G09090 1158 / 0.0 respiratory burst oxidase homolog B (.1.2) Lus10020644 [exp] 960 / 0 AT1G09090 1085 / 0.0 respiratory burst oxidase homolog B (.1.2) Lus10032308 [exp] 929 / 0 AT1G64060 1467 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Lus10017527 [exp] 900 / 0 AT1G64060 1445 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Lus10028755 [exp] 883 / 0 AT1G64060 1486 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Lus10016740 [exp] 849 / 0 AT5G47910 638 / 0.0 respiratory burst oxidase homologue D (.1) Lus10033423 [exp] 833 / 0 AT1G19230 1165 / 0.0 Riboflavin synthase-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G111600 [exp] 1423 / 0 AT5G51060 1255 / 0.0 ROOT HAIR DEFECTIVE 2, A. THALIANA RESPIRATORY BURST OXIDASE HOMOLOG C, NADPH/respiratory burst oxidase protein D (.1) Potri.015G109800 [exp] 1405 / 0 AT5G51060 1253 / 0.0 ROOT HAIR DEFECTIVE 2, A. THALIANA RESPIRATORY BURST OXIDASE HOMOLOG C, NADPH/respiratory burst oxidase protein D (.1) Potri.003G159800 [exp] 1246 / 0 AT5G47910 1299 / 0.0 respiratory burst oxidase homologue D (.1) Potri.001G070900 [exp] 1212 / 0 AT5G47910 1227 / 0.0 respiratory burst oxidase homologue D (.1) Potri.005G026200 [exp] 1084 / 0 AT1G09090 1165 / 0.0 respiratory burst oxidase homolog B (.1.2) Potri.003G133300 [exp] 957 / 0 AT1G64060 1489 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Potri.001G098300 [exp] 944 / 0 AT1G64060 1476 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Potri.006G137300 [exp] 828 / 0 AT1G19230 1203 / 0.0 Riboflavin synthase-like superfamily protein (.1.2) Potri.006G097200 [exp] 763 / 0 AT5G60010 1078 / 0.0 ferric reductase-like transmembrane component family protein (.1) Potri.016G112200 [exp] 730 / 0 AT5G60010 1052 / 0.0 ferric reductase-like transmembrane component family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0076 [flax] [poplar] FAD_Lum_binding PF08022 [flax] [poplar] FAD_binding_8 FAD-binding domain CL0220 [flax] [poplar] EF_hand PF08414 [flax] [poplar] NADPH_Ox Respiratory burst NADPH oxidase CL0091 [flax] [poplar] NAD_Ferredoxin PF08030 [flax] [poplar] NAD_binding_6 Ferric reductase NAD binding domain CL0328 [flax] [poplar] 2heme_cytochrom PF01794 [flax] [poplar] Ferric_reduct Ferric reductase like transmembrane component
Representative CDS sequence Show only first row Show all	>Lus10032517 pacid=23146219 polypeptide=Lus10032517 locus=Lus10032517.g ID=Lus10032517.BGIv1.0 annot-version=v1.0 ATGAGTAGAGTCGACGACCACCACCGTCTCTCATCGGAGACAGAGCTCGTCGGAGTGGACAGAGTCCTCCCTAACAGCGGCCAGTTAAGCGGACCTCTCA ACAAGCGCGGCGGCGCCGGAGGAAGGAAGACCAAGAGCGCCAGGTTCAACATACCGGAGACCACCTCCGCCTCCGCCTCCACTTCCTCTGACAACCATGA CCAGCAACAGTACGTCGAGATCACTCTCGACCTCAGGGACGACTCCGTCGCCCTCCACAGCGTCAAAGCTGCTAACGGCGCCGACGAGGATCCGGAGATG ACACTCCTCGCCAAGGACCTGGAGAAGCGGACGGCTTCCAACATAGGCTCCTCCGTCGTCAGAACTGCCTCGGCTAAGATCCGTCAAGTTTCTCAAGAGC TCAGGCGGCTCGCCTCCGTCAACCGAAGACCGACGGGGAGACTTGACCGTACGAAGTCGGCGGCGGCTCCTGCTCTGAAAGGTCTCAAGTTCATCAGCAA GGCCGACGGCGGCTCCGGATGGGTTGCCGTGGAGAAGAGGTTCGACCAGATCACTGCTGATTCCCCGGACGGGATGCTTCCCCGTGCTCGCTTCGGCGAA TGTATAGGGATGAAGGAGTCCAAGGAATTTGCGTTGGAGCTGTATGATGCTCTGGCGAGGAAGAGAAACATTCAGAGGGATTCAGTCAGCAAGTTTGAGC TAAAGGACTTCTGGGATCAGATCTCTGATCAGAGCTTTGATTCTAGGCTCCAGACTTTCTTTGACATGGTTGATAAAGATGCTGATGGCAGAATTACTGA AGAGGAAGTCAAGGAGATCATCACCCTCAGTGCTTCTGCAAACAGACTCTCGAATATCCAGAAACAAGCAGAGGAGTATGCAGCTCTGATCATGGAAGAA TTGGACCCAGAGCACCATGGATACATCATGATAGAGAACCTAGAAATGCTACTGCTGCAAGGACCAAACCAGTCAGTGAGAGCAGGAGAGAGCAAGAACT TGAGCAAGCTGCTGAGCCAGAAGCTGAAGCCGACGCTGGATGAGAATCCAATAAGTAGATGGCTAAGGAGCACAAAGTACTTCTTGTTGGACAATTGGCA GAGAGTTTGGGTGATGGCTTTGTGGATGGGAGTTATGGCTGGTCTGTTTGCTTACAAGTATATCCAGTACCGTGACAGGTCTGCATATGAGGTCATGGGG GTATGTGTATGCTTGGCCAAAGGTGGAGCCGAGACTCTGAAACTAAACATGGCTTTGATTTTGCTCCCCGTTTGCCGGAACACCATCACCTGGCTCCGCA ACAAGACCAAACTAGGCGTTGCTGTTCCTTTCGACGACAACCTTAACTTCCACAAGGTGATAGCAGTGGCGATAACAATAGGAGTAGGGATCCACGCCAT AGCCCATCTGGCATGCGACTTCCCTCGCCTTCTCGCCGCGGATGAAGAGAAATGGGAACTTATGCAGCCGTTCTTCGGAGACCAACCTTCGAGCTACTGG CATTTTGTCAAGTCGAAAGAAGGGGTGACTGGGATTATTATGGTCATTCTCATGGCAATAGCCTTCACACTTGCCACTCCTTGGTTCAGGCGCAACAAGC TCAACTTGCCACCTTTCCTGAAGAAGCTCACCGGTTTCAACGCCTTCTGGTACTCCCACCATTTGTTCGTCATCGTCTACACTTTGCTTGTTGTTCACGG TTACTACCTGTACCTTACCAAGGAGTGGTACAAGAAGACTACATGGATGTACTTGGCAGTTCCAGTAGTGCTTTACGCCAGTGAGAGATTGACAAGGGCA CTGAGATCCAGCATCAAGGCTGTTACAATCAAGAAGGTGGCCATTTATCCTGGAAATGTGTTGGCACTTCACATGTCAAAGCCTAATGGGTTCAGATACA AGAGCGGGCAGTACATGTTTGTGAATTGTGCTGCTGTGTCTCCATTTGAATGGCACCCGTTCTCCATAACTTCAGCTCCTGGAGACGATTACTTGAGTGT TCATATTAGAACACTTGGAGATTGGACAAGGCAGCTCAGAACTGTCTTCCAGGAGGTGTGTCAACCACCAACCACAGGGAAGAGTGGACTCCTCAGGGCC GATGAATTTCAGGGGAATAACAATCCCGACTTCCCAAGGATATTGATAGACGGACCCTACGGAGCACCAGCGCAGGACTATAAGGAATACGAGGTGGTAC TGCTGGTGGGTCTGGGGATCGGAGCAACTCCGATGATCAGCATCCTCAAGGACATTGTGAACAACATGAAAGACGAGGAAGAAGGGATGAATAATAACAA CAATGGGTTGGAGAACGGAGGGAGGTCCCCAAGGAGGCAGTCTCCGATCAGCCACCACAATAATAATAATAATAATAATAATAATAATAATAATAATAAT AAATCGAGCAGCAAGAGGAAGGACGCGTTCAACACGAGGAGGGCCTATTTCTATTGGGTCACAAGGGAACAGGGCTCATTCGACTGGTTCAAAGGTGTGA TGAATGAGGTTGCCGAGGTGGACCGGAACCATGTGATCGAGCTCCATAACTACTGTACCAGCGTCTACGAAGAAGGTGATGCCCGTTCTGCACTCATCGC CATGCTCCAGTCCCTTCATCACGCCAAGAATGGCCTAGACATTGTATCCGGAACGCGTGTCAAGTCCCACTTTGCCAAGCCTAATTGGCGTACAGTGTTC AAGCAAGTCGCTGTTCACCACCCTAATTCTCGAGTTGGTGTGTTTTATTGTGGGGCACCGGGATTGACGAAGGAGCTGCGAAACTTGGCTCTGGATTTCT CACACAAGACCACCACCAAGTTTGAATTCCACAAAGAGAACTTCTAA
AA sequence Show only first row Show all	>Lus10032517 pacid=23146219 polypeptide=Lus10032517 locus=Lus10032517.g ID=Lus10032517.BGIv1.0 annot-version=v1.0 MSRVDDHHRLSSETELVGVDRVLPNSGQLSGPLNKRGGAGGRKTKSARFNIPETTSASASTSSDNHDQQQYVEITLDLRDDSVALHSVKAANGADEDPEM TLLAKDLEKRTASNIGSSVVRTASAKIRQVSQELRRLASVNRRPTGRLDRTKSAAAPALKGLKFISKADGGSGWVAVEKRFDQITADSPDGMLPRARFGE CIGMKESKEFALELYDALARKRNIQRDSVSKFELKDFWDQISDQSFDSRLQTFFDMVDKDADGRITEEEVKEIITLSASANRLSNIQKQAEEYAALIMEE LDPEHHGYIMIENLEMLLLQGPNQSVRAGESKNLSKLLSQKLKPTLDENPISRWLRSTKYFLLDNWQRVWVMALWMGVMAGLFAYKYIQYRDRSAYEVMG VCVCLAKGGAETLKLNMALILLPVCRNTITWLRNKTKLGVAVPFDDNLNFHKVIAVAITIGVGIHAIAHLACDFPRLLAADEEKWELMQPFFGDQPSSYW HFVKSKEGVTGIIMVILMAIAFTLATPWFRRNKLNLPPFLKKLTGFNAFWYSHHLFVIVYTLLVVHGYYLYLTKEWYKKTTWMYLAVPVVLYASERLTRA LRSSIKAVTIKKVAIYPGNVLALHMSKPNGFRYKSGQYMFVNCAAVSPFEWHPFSITSAPGDDYLSVHIRTLGDWTRQLRTVFQEVCQPPTTGKSGLLRA DEFQGNNNPDFPRILIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISILKDIVNNMKDEEEGMNNNNNGLENGGRSPRRQSPISHHNNNNNNNNNNNNNN KSSSKRKDAFNTRRAYFYWVTREQGSFDWFKGVMNEVAEVDRNHVIELHNYCTSVYEEGDARSALIAMLQSLHHAKNGLDIVSGTRVKSHFAKPNWRTVF KQVAVHHPNSRVGVFYCGAPGLTKELRNLALDFSHKTTTKFEFHKENF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47910		ATRBOHD, RBOHD	respiratory burst oxidase homo...		Lus10032517 [exp]	0	1
AT5G47910		ATRBOHD, RBOHD	respiratory burst oxidase homo...		Lus10043017 [exp]	1.0	0.9380
AT3G21610			Acid phosphatase/vanadium-depe...		Lus10003670 [exp]	6.2	0.7481
AT1G53050			Protein kinase superfamily pro...		Lus10039836 [exp]	6.3	0.7871
AT1G30755			Protein of unknown function (D...		Lus10017259 [exp]	8.5	0.7628
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10026607 [exp]	8.9	0.7613
AT2G02960			RING/FYVE/PHD zinc finger supe...		Lus10012826 [exp]	12.2	0.7830
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10031472 [exp]	14.5	0.7880
AT1G30040		ATGA2OX2	GIBBERELLIN 2-OXIDASE 2, gibbe...		Lus10023311 [exp]	14.8	0.7087
AT1G30755			Protein of unknown function (D...		Lus10013553 [exp]	15.7	0.7294
AT5G35960			Protein kinase family protein ...		Lus10027964 [exp]	24.2	0.7420

Compare expression of checked genes

Lus10032517 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.