Plant FIBer expression Database

Lus10032518 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G07380 441 / 9e-146 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10043018
[exp]
964 / 0 AT5G07380 392 / 2e-128 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G109700
[exp]
557 / 0 AT5G07380 637 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Lus10032518 pacid=23146425 polypeptide=Lus10032518 locus=Lus10032518.g ID=Lus10032518.BGIv1.0 annot-version=v1.0
ATGGTGCTACTCTGTTTCGAGATGAATCTCTGCAGCCTGTCGCCTTCCTCAGTTGCAGACCTAAAGCAGGTAGCGACGTGCATTTTCCTGTTTATTTCAG
CAATGGCAGGACTCTCCGTCTATCTTTCGATTTGGCTGACTATCGCGGATTCCGACCAGTGTTTGTTGCAGCTAGCTAATTACTATGCAATTTCATCTTC
ACTACGAGGGAAGCCGGACTGCGTTGGTGACAGGATCGGCTTGTGCTACGTCTCCGACGACCGTAGTTCGTCTTCGATCGAGGTGTTTCGCTTCTTCCAT
CCGCTGTTTACTGTTCTTTTCACTTTGTTTTATTCTCTTCGGGACGAAAATGAACAGATGTTTGACGATTTTGAACAGCTCAAAGTCGCATACAGTCCTA
TAGGAGACTTCCGTCTCCGCGATTTCCACCAGGCGGTTAACAACTTTCCTACAGACTCTTTTCTGCCTGATATCAGCGATTCCGATACTCTTTGTTGCTG
CGATATGAAGCTTTCCAGTATACTGAATGATGAAGCGCTTTATTCATGGGGAGGTAGAGATGTCAAGAAGAAACTAATTGTTCTAAGTTCGTATTTCCCG
AGAACCATAGAGGACGCAGAAAAGAAGCTTCTCACGGATGCTTCTTATCATGGCGTTTCTGTGGAGTTCGTATTGATCGAGCAAAGTTCAAGTAATCTCA
GCTATATGATCGAGAACAAAAGCAGCTTCGTGGGAAGCTTATCTGATCTTCATAATTGCCATTTCAAAAGTTATCTTCCAGGTAGCAAAATATTTCACGG
CCTGACAAAACGCTGGCTGCATGATCTAAGGAGCGAAATGGAAGAACCTTTACTAGCTCGTTTCAACTTTGGGGAGAGCCTTGTTGGCAATCTGGATCAT
ATACTCTGTTGCTTGTCCAGCTCCTTCTATCAATTTGTCGATGATTTTGGTACCTGCCAGACCTGCAGGTGTCGTGGCACTCAATTGCATCAAGTGACAC
ATGAGAGAGTTGAGACTCTTTCTTGTCCAGACACTGCCAGTATTCTTGGAGCATTTGATGTTATCTGGAATTCTGTGGGAATTGAAGAGAAAAGTCCTAT
GAAGCCCGGAGATGTGTCTTGTCCCATTGAATTCAACCTCATTCAAAGAACAAACCTGAGGACTTTGAGTGAAGGTGTCATTTTTGGCTCTCCATATATT
GTAACGCCAGCAGACTATCATAGGATAGGAATATCTTCTGGTGAAGAAGATCGGCTGGAACTTAATGATCAAGGCAAGTTAGAAGGATGTGATCTTGCAG
CTTTCCGAGGAATTTGTCATGCCTTACATTCAATGGATCAAGGATTGATATGTTCATCATACTATAATCTAAAAACTATGGCGGGAACAGCCTTCAACTG
TTTTTACATCCTTCTGCCTTCAGAGAATGGGCCCATGCTTCTCAGGCGTCTGTTAGGCTCAGAAGAAGTCTTGCCTATGCCCGATCTCCATCAAGTGGAT
AGTCGTTCAATCACTCAGGATATTCAGAGTTCCATTCAATCCGTATTACAGAAGATTGAATCAAGTGATTATAATCCTCTTCAGCACGAGAGAGGCTTCC
ATCAAAAGCTCAACTCGCTCGTAAATGAGAGCCTACAGTTGAGGTCGATCCCCCCGCCTAAGGTAGATGCAGGACCACCACAACTGGGCTCAATAAACCC
GCCAGATTCGTCGGAGGCAATCGATTTCTCAGACGGAGAGCTAGAAGCCATAATGCTGGAAGAGGAAAATCTGAAGATGAGCCATACAGCTAGAGAAGAT
ACAAAGAACACACACTCAATTTCGGAAGAATTGATGGTGGTCCTTGAAGCTCCCAAGATACATTCTCCAACCTGTAGCATCTCTAAACCAAGAATTAACG
AGGCATCAGATGGCATGAAGCAGCATACGAAAAACACACCCTCGATTTCGGAAGAATGGGAGCAGTTGGTGGTCCTTGAAGCTCCCAAGATACTGCATTC
TCCCACCCGTAGCATCTCCAAACCAAGGATTAACGAGGCACCAGATGGCATCAAGCAGCTGGACGCCAAAACTTCAAGGATACTGGAAAGACTGGAAGTG
CCTAGACAGTTGAAAGCAAAGTCAAAAAATAACTCTCCGACTCTAACTCCGACAGTCTATGGGAGCAGCAGCATTTCGGAGATAATGAAAAGGCCTCTTG
TTGCTTTCCGGCCAATCCAAGCAGCTGGACAACCCTCGACCTCAACACAGTTGATGAAACCCATATTCCAAAGACCTAAAAGAAAGCTCAGATAA
AA sequence
>Lus10032518 pacid=23146425 polypeptide=Lus10032518 locus=Lus10032518.g ID=Lus10032518.BGIv1.0 annot-version=v1.0
MVLLCFEMNLCSLSPSSVADLKQVATCIFLFISAMAGLSVYLSIWLTIADSDQCLLQLANYYAISSSLRGKPDCVGDRIGLCYVSDDRSSSSIEVFRFFH
PLFTVLFTLFYSLRDENEQMFDDFEQLKVAYSPIGDFRLRDFHQAVNNFPTDSFLPDISDSDTLCCCDMKLSSILNDEALYSWGGRDVKKKLIVLSSYFP
RTIEDAEKKLLTDASYHGVSVEFVLIEQSSSNLSYMIENKSSFVGSLSDLHNCHFKSYLPGSKIFHGLTKRWLHDLRSEMEEPLLARFNFGESLVGNLDH
ILCCLSSSFYQFVDDFGTCQTCRCRGTQLHQVTHERVETLSCPDTASILGAFDVIWNSVGIEEKSPMKPGDVSCPIEFNLIQRTNLRTLSEGVIFGSPYI
VTPADYHRIGISSGEEDRLELNDQGKLEGCDLAAFRGICHALHSMDQGLICSSYYNLKTMAGTAFNCFYILLPSENGPMLLRRLLGSEEVLPMPDLHQVD
SRSITQDIQSSIQSVLQKIESSDYNPLQHERGFHQKLNSLVNESLQLRSIPPPKVDAGPPQLGSINPPDSSEAIDFSDGELEAIMLEEENLKMSHTARED
TKNTHSISEELMVVLEAPKIHSPTCSISKPRINEASDGMKQHTKNTPSISEEWEQLVVLEAPKILHSPTRSISKPRINEAPDGIKQLDAKTSRILERLEV
PRQLKAKSKNNSPTLTPTVYGSSSISEIMKRPLVAFRPIQAAGQPSTSTQLMKPIFQRPKRKLR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G07380 unknown protein Lus10032518
[exp]
0 1
AT5G66840 SAP domain-containing protein ... Lus10008134
[exp]
4.2 0.8944
AT3G20260 Protein of unknown function (D... Lus10033354
[exp]
6.2 0.9234
Lus10032947
[exp]
7.7 0.9004
AT1G67590 Remorin family protein (.1.2) Lus10026481
[exp]
14.0 0.8246
AT5G62710 Leucine-rich repeat protein ki... Lus10033104
[exp]
15.1 0.9020
AT5G58280 B3 AP2/B3-like transcriptional fa... Lus10017434
[exp]
16.5 0.9035
AT4G37130 hydroxyproline-rich glycoprote... Lus10022470
[exp]
17.9 0.8997
AT3G54560 HTA11 histone H2A 11 (.1) Lus10018753
[exp]
18.0 0.9006
AT1G22130 MADS AGL104 AGAMOUS-like 104 (.1) Lus10016809
[exp]
22.6 0.9007
AT5G14070 ROXY2 Thioredoxin superfamily protei... Lus10041538
[exp]
28.7 0.8964

Lus10032518 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.