Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07360 772 / 0 Amidase family protein (.1.2) AT3G25660 95 / 2e-20 Amidase family protein (.1) AT1G08980 58 / 1e-08 ATTOC64-I, ATAMI1 ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-I, AMIDASE-LIKE PROTEIN 1, amidase 1 (.1) AT5G64440 54 / 2e-07 ATFAAH fatty acid amide hydrolase (.1) AT4G34880 54 / 3e-07 Amidase family protein (.1) AT3G17970 52 / 1e-06 ATTOC64-III translocon at the outer membrane of chloroplasts 64-III (.1) AT5G09420 51 / 1e-06 MTOM64, ATTOC64-V, AtmtOM64 outer membrane 64, ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V, translocon at the outer membrane of chloroplasts 64-V (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043019 [exp] 1040 / 0 AT5G07360 858 / 0.0 Amidase family protein (.1.2) Lus10020781 [exp] 100 / 8e-22 AT3G25660 780 / 0.0 Amidase family protein (.1) Lus10007361 [exp] 97 / 7e-21 AT3G25660 795 / 0.0 Amidase family protein (.1) Lus10027852 [exp] 92 / 2e-19 AT4G34880 489 / 3e-170 Amidase family protein (.1) Lus10025066 [exp] 89 / 2e-18 AT4G34880 484 / 3e-168 Amidase family protein (.1) Lus10002805 [exp] 80 / 9e-16 AT4G34880 454 / 3e-158 Amidase family protein (.1) Lus10027853 [exp] 70 / 3e-12 AT4G34880 462 / 4e-159 Amidase family protein (.1) Lus10016685 [exp] 66 / 5e-11 AT5G64440 453 / 2e-152 fatty acid amide hydrolase (.1) Lus10029941 [exp] 63 / 4e-10 AT1G08980 563 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-I, AMIDASE-LIKE PROTEIN 1, amidase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G109400 [exp] 801 / 0 AT5G07360 823 / 0.0 Amidase family protein (.1.2) Potri.018G086350 [exp] 102 / 1e-22 AT3G25660 766 / 0.0 Amidase family protein (.1) Potri.004G169300 [exp] 101 / 1e-22 AT4G34880 493 / 7e-172 Amidase family protein (.1) Potri.004G171300 [exp] 94 / 6e-20 AT4G34880 473 / 5e-164 Amidase family protein (.1) Potri.009G130400 [exp] 93 / 9e-20 AT4G34880 489 / 1e-170 Amidase family protein (.1) Potri.004G171000 [exp] 91 / 6e-19 AT4G34880 535 / 0.0 Amidase family protein (.1) Potri.009G130500 [exp] 89 / 3e-18 AT4G34880 500 / 2e-174 Amidase family protein (.1) Potri.009G130700 [exp] 82 / 2e-16 AT4G34880 528 / 0.0 Amidase family protein (.1) Potri.004G169400 [exp] 74 / 6e-14 AT4G34880 419 / 1e-144 Amidase family protein (.1) Potri.005G070300 [exp] 65 / 8e-11 AT5G64440 488 / 1e-166 fatty acid amide hydrolase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01425 [flax] [poplar] Amidase Amidase
Representative CDS sequence Show only first row Show all	>Lus10032519 pacid=23146311 polypeptide=Lus10032519 locus=Lus10032519.g ID=Lus10032519.BGIv1.0 annot-version=v1.0 ATGGCGACGAAGGGTATGGAGACAATAAAGGATTGGCAAGCGATGCATCATGACAGTGACAAATTGAGCGGTGGCAAGTGTTCCAACGCTTCCCAACTTA GGGAAGCATTCAAAATATTCAACGCCGGATTCTTCACTGAAGCGAAGGTGCTGAAAGTTGCTAAAGAGGCCGTTGAGCTCAACTTGCCAATCGCGGAATC CAATAGGAAGTTGGTTGCTTCTGTAAACGGTGGATTGCAGGATCCTTCTTGTTTGGTCTTCAGTTCGGAGTGGGCTCCCGGTAGTAATGGTGCTGCCATC GATAAATTTAACTATCCTTCCGTCTCCGGCCTCAAGAAGAGGCCGGAAAATGACGAGGATATTGCCTTTATGAATATACTTGAATTAGGGGAGCTCCTTC GGACCGAGCAACTTACTTCTCAGCAACTTACCACAATCTTCCTCAAGAGATTGAAGAGGTACAACGGAGCTCTTGAGTCTGTGATCACTCTTACTGAAGA CTTGGCTTATGAGCAAGCCAAAAAGGCTGATGAATTGTTTGCCAAAGGAGACTACTTGGGACCTCTCCATGGCATGCCTTATGGTTTGAAGGACATAATA GCAGTACCTGGCTACAAAACAACATGGGGTTCAACAAGTTTCAAGAACCAAGTCCTTGACATCGAAGCCACTGTCTATCAAAGGTTGAAGGCTGCAGGTG CTGTTCTAGTTGCTAAACTCGTTTCGGGATCCCTGGCCTATGATGACATTTGGTTCGGAGGCAGGACTAGAAACCCTTGGAACATTGAGGAGTTCTCCAC CGGTTCATCTGCTGGACCTGCTGCTAGTACCTCGGCTGGAATGGTCCCTTTCGCAATTGGTTCCGAAACAGCCGGCTCAATCACATACCCTGCTGCTCGT TGTGGGGTGACTGCATTGCGCCCGACTTTTGGCACTGTTGCTCGAACTGGTGTTATGAGCATATCAGAAAGCTTGGATAAGCTTGGCCCTTTCTGCAGAA GCGCCATTGATTGTTCCATAGTTCTCGATACCATTCGTGGGAAAGATTCAGACGATATCTCTTCCAGAGATGTTCCCCTTCAAGACCCGTTCTCGGTCGA CATTACTAAGCTCACAGTTGGATATCTAGATGATGCCGAAATGGAGGTTGTGGATGTGCTCAAGTCCAAAGGTGTGAACATGGTCCCATTCAATCTAAGC TACACGGTGGATTCCGTCCAAGGAATACTAAATTTCACAATGGACGTTGAGATGCTGGCTCACTTTGACCAGTGGCAGCGCGAAGGGCTGGACGATGTTT ACGAAGCTCAGGATCAATGGCCCACAGAGCTCCGCCGTGCCCGAGCAATCTCGGCCGTCGATTTCTTTCATTCCCAAAGGGCGCGATGGAAACTCATCAG GGAAGTGAAAGAAAGCTTCACAGTCGACGCTTTCGTTGGTAACGTGACAGACTGGGAGAAAGTGTGCTTGGGTAATTTGGTTGGTTTGCCGGTTATGGTT GTTCCTACAGGGTTCAAGAATATTCCGAACCCGCCCTCCACCGGTACGAAACGAAGAACCACCGTAACCACTGGGATCTACGCTCCTCCTGATCATGACC ATATCGTCCTGGCGCTGGCAATGGCGTACCAGTCGGTGACGGATCACCATAAGCAGAGGCCGCCGATTGATAATCTTGGCCGAGATGATGTGATTCCCGA CCCGCCCAAGCACATCATCCCTCCCAGAGTTCTGCGTCTCTGA
AA sequence Show only first row Show all	>Lus10032519 pacid=23146311 polypeptide=Lus10032519 locus=Lus10032519.g ID=Lus10032519.BGIv1.0 annot-version=v1.0 MATKGMETIKDWQAMHHDSDKLSGGKCSNASQLREAFKIFNAGFFTEAKVLKVAKEAVELNLPIAESNRKLVASVNGGLQDPSCLVFSSEWAPGSNGAAI DKFNYPSVSGLKKRPENDEDIAFMNILELGELLRTEQLTSQQLTTIFLKRLKRYNGALESVITLTEDLAYEQAKKADELFAKGDYLGPLHGMPYGLKDII AVPGYKTTWGSTSFKNQVLDIEATVYQRLKAAGAVLVAKLVSGSLAYDDIWFGGRTRNPWNIEEFSTGSSAGPAASTSAGMVPFAIGSETAGSITYPAAR CGVTALRPTFGTVARTGVMSISESLDKLGPFCRSAIDCSIVLDTIRGKDSDDISSRDVPLQDPFSVDITKLTVGYLDDAEMEVVDVLKSKGVNMVPFNLS YTVDSVQGILNFTMDVEMLAHFDQWQREGLDDVYEAQDQWPTELRRARAISAVDFFHSQRARWKLIREVKESFTVDAFVGNVTDWEKVCLGNLVGLPVMV VPTGFKNIPNPPSTGTKRRTTVTTGIYAPPDHDHIVLALAMAYQSVTDHHKQRPPIDNLGRDDVIPDPPKHIIPPRVLRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07360			Amidase family protein (.1.2)		Lus10032519 [exp]	0	1
AT5G05550	Trihelix		sequence-specific DNA binding ...		Lus10028985 [exp]	2.8	0.9287
AT5G58750			NAD(P)-binding Rossmann-fold s...		Lus10040675 [exp]	3.0	0.9225
AT5G03700			D-mannose binding lectin prote...		Lus10014371 [exp]	4.6	0.9398
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Lus10032926 [exp]	7.9	0.9269
AT2G26230			uricase / urate oxidase / nodu...		Lus10008952 [exp]	9.5	0.9260
AT1G74790			catalytics (.1)		Lus10033116 [exp]	9.8	0.9262
AT1G32170		XTH30, XTR4	xyloglucan endotransglycosylas...		Lus10012115 [exp]	11.3	0.9155
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10015519 [exp]	11.8	0.9262
AT3G19230			Leucine-rich repeat (LRR) fami...		Lus10010528 [exp]	12.0	0.9229
					Lus10005397 [exp]	14.1	0.9192

Compare expression of checked genes

Lus10032519 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.