Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61780 1285 / 0 TSN2, AtTudor2 Arabidopsis thaliana TUDOR-SN protein 2, TUDOR-SN protein 2 (.1) AT5G07350 1284 / 0 TSN1, AtTudor1 Arabidopsis thaliana TUDOR-SN protein 1, TUDOR-SN protein 1 (.1.2) AT2G11271 56 / 4e-10 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043020 [exp] 1878 / 0 AT5G07350 1353 / 0.0 Arabidopsis thaliana TUDOR-SN protein 1, TUDOR-SN protein 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G111200 [exp] 1468 / 0 AT5G07350 1382 / 0.0 Arabidopsis thaliana TUDOR-SN protein 1, TUDOR-SN protein 1 (.1.2) Potri.015G109300 [exp] 1452 / 0 AT5G07350 1377 / 0.0 Arabidopsis thaliana TUDOR-SN protein 1, TUDOR-SN protein 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0049 [flax] [poplar] Tudor PF00567 [flax] [poplar] TUDOR Tudor domain CL0049 [flax] [poplar] Tudor PF00565 [flax] [poplar] SNase Staphylococcal nuclease homologue
Representative CDS sequence Show only first row Show all	>Lus10032520 pacid=23146309 polypeptide=Lus10032520 locus=Lus10032520.g ID=Lus10032520.BGIv1.0 annot-version=v1.0 ATGGCGACATCAACAGCTGGGGCCACAGGATGGTACAAGGGGAGAGTGAAAGCTGTGACATCTGGTGACTGTTTGGTCATTATGGCTATTACTACTAGCA AGCCCGGACCTCCTCCTGAGAAGACTGTGACTTTGGCTTCTCTTATGGCACCTAAGCTGGCTCGGAGAGGTGGGGTTGACGAGCCCTTTGCTTGGGAGAG TAGAGAGTTTCTGAGGAAGCTTTGCATAGGGAAGGAAGTAACTTTCAAGGTTGACTACGCTGTCCCTTCAATTGGAAGGGAATTCGGTACAGTCTTCTTG GGTGACAAAAATGTTGCGTCACTGGTTGTTTCTGAAGGCTGGGCCAGGGTCAGGGAGCAGGGATCACAGAAAGGAGAAGTGAGTCCCTTCCTTGCTGAAT TGCTACAGCTTGAAGAACAAGCTAAGCAACAAGGTCTTGGTAAATGGAGTAAGGATCCTGGTGCTGCTGAGGCATCTGTCAGAGATCTGCCCCCTTCTTC AATTGGAGATCCTAGTAACTTGAATGCCGAAGCTTTTATTGCTGAAAACAAAGGTAGACCGATGGAATGCGTTGTTGAGCAGGTTCGTGATGGCAGTACT ATCCGGGTGTATTTGCTCCCAGATTTTCAGTTCGTTCAAGTTTTTGTTGCTGGAATTCAGTCCCCATCAATGGGTAGAAGACCACCAGTAGAAAATTTCA AAGAGTCAGAGGCAAAACCCAAGGAGTCTAACGGAGATGCCTCTGCGCCCCAGGCTCCCCTGACTACAGCGCAAAGATTTGCAGGTTCTGCGATGGCTGC TGAAGTGGCTCCTGAACCGTTTGCTGTTGAGGCCAAACATTTTACAGAGCTTCGTGTTTTAAATAGAGACGTTCGTGTTGTATTCGAGGGTCATGACAAG TTTAGCAATTTGATTGGGTCGGTGTATTATCCTGACGGTGACACTGCTAAGGATTTGGGTTTGGAACTTGTGGAAAATGGTTTAGCTAAATATGTTGAAT GGAGCGCCAACATTCTGGAACAAGATGCCAAGCAAAAGTTGAGAGCTGCAGAGCTTCAAGCAAAGAAAATCCGCTTGAAGATTTGGACAAATTTTGTTCC AGATCCTAAAAAATCAAAAGCAATCCATGACCAGAAATTCTCTGGAAAGGTTGTGGAGGTTGTAAGCGGTGATTGCATCATTGTAGCCGATGATTCTGTC CCCTTCGGACAGCTGGCTGAAAGGCGAGTCTATCTTTCAAGTATTAAGTGTCCAAAAATGGGGAATCCTCGTAGAAATGAGATTCCTGAACCATATGCCC CAGAAGCAAAAGAGTTCTTGAGAACACGCCTCATCGGCCAACAGGTCAATGTGCAAATGGAGTACTCTTGGAACCCTGATGCATCTGGAGGTGCGGCTGG TGGTGAGTCGAGAGTAATGGATTTTGGGTCCATCTTTCTTCCATCTGCTACCAAGGGAGAAGGAGCACCAGAAGCTGCACCAAATGCTTCTGGTCAGCAA GCCGGTATCAATGTGGCTGAGTTGATTCTCTCTCGTGGACTTGGTTCTGTTACCAAACATAGAGACTTTGAGGAGAGGTCAGACTTCTATGATACCCTTC TTGCTGCTGAAACACGGGCCAGGAATGGAAAGAAAGGGATTCATTCCACGAAGCAGCCTTCTTCCACGCACGTAACAGACCTCACTACGGACGCGACATC AGCCAAGAAAGCCAGAGATTTCTTGCCGTTCCTGCAACGTGGTAGAAGGATTACTGCTATAGTGGAATATGTGCTTAGTGGTCATCGTTTCAAGCTGTTG GTTCCGAAGGAAACTTGCAGCATTGCGTTTTCTTTTTCTGGTGTTAGGTGCCCCGGTCGTAACGAACCTTATGCAGATGAAGCAATTGCTTTCATGAGGA GGAGGTTAATGCAGAGAGAAGTAGAGATTGAAGTGGAGACCGTAGATAGAACTAAAACTTTCCTGGGATCCTTGTGGGAGTCGAGAACTAACATGGCAAC CGTTCTTTTGGAAGCTGGCCTGGCAAAACTGCAGATGTCCTTTGGTAGGGACAGGATTGCTGATGCCCATCTTCTTGAGCGGGCGGAGGAATCAGCCAAG AAACAGAAATTGAAAATATGGGAGAATTATGTTGAAGGGGAAGTGGTAACTAATGGTGCTCCAACCATTGAGGGCAAGCAGAAAGAAGTTCTGAAGGTAG TGGTTACCGAAGTTTTGGGAGCGGGTAAGTTCTACGTCCAGACTGTTGGGGATCAGAGAGTAGCATCTATTCAGCAACAGCTCGCATCCCTTAAAATCCA GGAAGCTCCAGTCATTGGTGCTTTTAATCCAAAGAAGGGTGATATTGTACTGGCACAGTTCAGTGCAGATAACTCGTGGAATCGAGCTATGATTGTGAAT GTGCCACGCGGAGGAGTTGTCCAATCAACAAAGGATAAGTTCGAGGTGTTCTACATTGATTACGGGAACCAGGAAGAGGTTCCGTACGGACATTTGCGAC CTATTGACCCTGCAGTCTCTGTAGCACCTGGACTTGCACAGCTATGCAGCCTGGCATACATCAAGGTCCCGGACTTGGATGCTGACTGTGGCCCAGAGGC AGGTGAGTTTTTGAGCGGTAGCACACTTAACAGTGGGAAAGAGTTCAGGGCAAAGATAGAGGAGAAGGATGTTTCCGGAGGAAAAGTTAAAGGACAGGGA ACTGGTCCAGTCCTTATCGTAACCCTCGTGGCTGTGGATGCTGAAATAAGCGTAAATGCCGCCCTGGTTCAGGAAGGACTTGCTAGGATAGAGAAGAAGA GGAAGTGGGATCCAAGGGAGAGACAAGTAGCCCTTGAGAACTTGGAGAAGTTCCAGGACGAAGCTCGATCGGGCAGGAGGGGAATGTGGGTCTATGGAGA TGTGCAGTCAGATGATGAGGATGAAGGTGGTCCTCGTAAAGCTCCAGGCGGTGGTGGACGTCGATGA
AA sequence Show only first row Show all	>Lus10032520 pacid=23146309 polypeptide=Lus10032520 locus=Lus10032520.g ID=Lus10032520.BGIv1.0 annot-version=v1.0 MATSTAGATGWYKGRVKAVTSGDCLVIMAITTSKPGPPPEKTVTLASLMAPKLARRGGVDEPFAWESREFLRKLCIGKEVTFKVDYAVPSIGREFGTVFL GDKNVASLVVSEGWARVREQGSQKGEVSPFLAELLQLEEQAKQQGLGKWSKDPGAAEASVRDLPPSSIGDPSNLNAEAFIAENKGRPMECVVEQVRDGST IRVYLLPDFQFVQVFVAGIQSPSMGRRPPVENFKESEAKPKESNGDASAPQAPLTTAQRFAGSAMAAEVAPEPFAVEAKHFTELRVLNRDVRVVFEGHDK FSNLIGSVYYPDGDTAKDLGLELVENGLAKYVEWSANILEQDAKQKLRAAELQAKKIRLKIWTNFVPDPKKSKAIHDQKFSGKVVEVVSGDCIIVADDSV PFGQLAERRVYLSSIKCPKMGNPRRNEIPEPYAPEAKEFLRTRLIGQQVNVQMEYSWNPDASGGAAGGESRVMDFGSIFLPSATKGEGAPEAAPNASGQQ AGINVAELILSRGLGSVTKHRDFEERSDFYDTLLAAETRARNGKKGIHSTKQPSSTHVTDLTTDATSAKKARDFLPFLQRGRRITAIVEYVLSGHRFKLL VPKETCSIAFSFSGVRCPGRNEPYADEAIAFMRRRLMQREVEIEVETVDRTKTFLGSLWESRTNMATVLLEAGLAKLQMSFGRDRIADAHLLERAEESAK KQKLKIWENYVEGEVVTNGAPTIEGKQKEVLKVVVTEVLGAGKFYVQTVGDQRVASIQQQLASLKIQEAPVIGAFNPKKGDIVLAQFSADNSWNRAMIVN VPRGGVVQSTKDKFEVFYIDYGNQEEVPYGHLRPIDPAVSVAPGLAQLCSLAYIKVPDLDADCGPEAGEFLSGSTLNSGKEFRAKIEEKDVSGGKVKGQG TGPVLIVTLVAVDAEISVNAALVQEGLARIEKKRKWDPRERQVALENLEKFQDEARSGRRGMWVYGDVQSDDEDEGGPRKAPGGGGRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07350		TSN1, AtTudor1	Arabidopsis thaliana TUDOR-SN ...		Lus10032520 [exp]	0	1
AT5G07350		TSN1, AtTudor1	Arabidopsis thaliana TUDOR-SN ...		Lus10043020 [exp]	2.4	0.9615
AT5G08680			ATP synthase alpha/beta family...		Lus10035264 [exp]	3.0	0.9629
AT4G21150		HAP6	HAPLESS 6, ribophorin II (RPN2...		Lus10022911 [exp]	3.9	0.9579
AT2G41490		GPT	UDP-glcnac-adolichol phosphate...		Lus10012300 [exp]	4.4	0.9325
AT5G60640		ATPDI2, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10037403 [exp]	5.1	0.9616
AT2G01720			Ribophorin I (.1)		Lus10040410 [exp]	5.7	0.9582
AT5G65750			2-oxoglutarate dehydrogenase, ...		Lus10015205 [exp]	6.3	0.9477
AT5G66680		DGL1	DEFECTIVE GLYCOSYLATION, dolic...		Lus10014330 [exp]	6.9	0.9559
AT4G16180			unknown protein		Lus10037780 [exp]	7.7	0.9442
AT1G10950		AtTMN1	transmembrane nine 1 (.1)		Lus10012697 [exp]	8.0	0.9360

Compare expression of checked genes

Lus10032520 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.