Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61790 640 / 0 CNX1, ATCNX1 calnexin 1 (.1) AT5G07340 631 / 0 Calreticulin family protein (.1.2) AT1G09210 193 / 1e-55 AtCRT1b calreticulin 1b (.1) AT1G56340 188 / 5e-54 AtCRT1a, CRT1 calreticulin 1a (.1.2) AT1G08450 152 / 9e-41 AtCRT3, PSL1, EBS2, CRT3 PRIORITY IN SWEET LIFE 1, EMS-MUTAGENIZED BRI1 SUPPRESSOR 2, A. thaliana calreticulin 3, calreticulin 3 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043021 [exp] 810 / 0 AT5G61790 793 / 0.0 calnexin 1 (.1) Lus10031410 [exp] 182 / 3e-51 AT1G56340 621 / 0.0 calreticulin 1a (.1.2) Lus10010923 [exp] 179 / 8e-50 AT1G56340 616 / 0.0 calreticulin 1a (.1.2) Lus10010924 [exp] 179 / 2e-49 AT1G56340 621 / 0.0 calreticulin 1a (.1.2) Lus10020222 [exp] 174 / 4e-48 AT1G08450 586 / 0.0 PRIORITY IN SWEET LIFE 1, EMS-MUTAGENIZED BRI1 SUPPRESSOR 2, A. thaliana calreticulin 3, calreticulin 3 (.1.2.3) Lus10031409 [exp] 174 / 3e-47 AT1G56340 621 / 0.0 calreticulin 1a (.1.2) Lus10026849 [exp] 172 / 1e-46 AT1G08450 590 / 0.0 PRIORITY IN SWEET LIFE 1, EMS-MUTAGENIZED BRI1 SUPPRESSOR 2, A. thaliana calreticulin 3, calreticulin 3 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G109200 [exp] 657 / 0 AT5G61790 710 / 0.0 calnexin 1 (.1) Potri.012G111100 [exp] 638 / 0 AT5G61790 677 / 0.0 calnexin 1 (.1) Potri.001G070600 [exp] 513 / 8e-179 AT5G61790 582 / 0.0 calnexin 1 (.1) Potri.013G009500 [exp] 181 / 2e-51 AT1G09210 579 / 0.0 calreticulin 1b (.1) Potri.005G015100 [exp] 177 / 9e-50 AT1G56340 566 / 0.0 calreticulin 1a (.1.2) Potri.019G055200 [exp] 167 / 3e-46 AT1G08450 569 / 0.0 PRIORITY IN SWEET LIFE 1, EMS-MUTAGENIZED BRI1 SUPPRESSOR 2, A. thaliana calreticulin 3, calreticulin 3 (.1.2.3) Potri.017G026300 [exp] 163 / 1e-44 AT1G08450 615 / 0.0 PRIORITY IN SWEET LIFE 1, EMS-MUTAGENIZED BRI1 SUPPRESSOR 2, A. thaliana calreticulin 3, calreticulin 3 (.1.2.3) Potri.007G131500 [exp] 159 / 4e-43 AT1G08450 619 / 0.0 PRIORITY IN SWEET LIFE 1, EMS-MUTAGENIZED BRI1 SUPPRESSOR 2, A. thaliana calreticulin 3, calreticulin 3 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00262 [flax] [poplar] Calreticulin Calreticulin family
Representative CDS sequence Show only first row Show all	>Lus10032521 pacid=23146350 polypeptide=Lus10032521 locus=Lus10032521.g ID=Lus10032521.BGIv1.0 annot-version=v1.0 ATGGTCCGAGCGAACAAGTTGCTGCAGGTCTCTATGCGACTCGCACTACTCTCCGTCGTCGTAGCTCTCGTCTCTCAAGCCCCGCAGCTACGCGCCGCCG GCGACAACGCTATCTTGTTTGAGTCGTTCGATGAGCCTTTTGAAGGGCGATGGATCGTCTCCGAGAAAGATGATTACCAAGGTGTATGGAAGCATTCTAA AAGTGAGGGACATGATGATTATGGACTTCTTGTGAGTGAGAAGGCCAGGAAATACGCCATTGTTACAGAGCTTGAGAAGGCAGCGGATCTCCAGGATGGT ACCACTGTCCTACAGTTTGAGACTCGTCTTCAGAATGGGCTTGAGTGCGGTGGTGCTTATCTCAAATATCTCCGCCCTCAAGAAGCTGGGTGGATAGCTA AGGGGTTCAACAACGACTCACCTTATTCGATTATGTTTGGACCAGACAAATGTGGAGCCACAAACAAAGTGCACTTCATCCTGAAGCACAAGAACCCCAA GAGCGGGGAGTACGTGGAACACCATCTGAAGTTCCCACCTTCAGTGCCTTCAGATAAGCTTACCCATGTGTACACTGCGATCTTGAAGCCAGACAATGAG GTGAGGATCCTCATTGATGGTGAGGAAAAGAAGAAAGCCAATTTCCTTTCTTCCGAAGACTTTGAGCCTGCTCTCATCCCCGCCAAGACCATCCCTGATC CAGATGACAAGAAACCCGAGGACTGGGATGAGAGAGCCAAAATCCCAGACCCCAAGGCTGTCAAGCCAGAAGACTGGGATGAGGAAGCTCCAATGGAGAT TGAAGATGTGGATGCTGTGAAACCTGAAGGATGGTTGGACGATGAGCCTGAAGAGGTTGATGACCCTGAAGCTACCAAACCAGAAGACTGGGATGATGAG GAGGATGGTGAATGGGAAGCCCCCAAGATTGACAACCCAAAGTGTGAAACATCCCCTGGTTGCGGTGAATGGAAGAGGCCAATGAAGAGCAACCCTGCTT ACAAGGGGAAGTGGCATGCTCCCATGATCGATAACCCTAGCTACAAGGGTATCTGGAAGCCTAGGGACATTCCTAACCCAGACTTCTTCGAGCTTGACGC TCCCAACTTCGAACCTATCGCTGCTGTTGGAATTGAGATCTGGACGATGCAGGATGGGATACTGTTTGACAACGTTTTGATAGCAAAATCCGAGGAGGAG GCTACTTCTGTCAGAGATGAACTATGGAAACCCAAGTTTGATGCTGAGAAGGAGAAGCAGAATGCCGAGGAGGCAGCAGCTACTGGGTCAGATGGTCTTG CTGGCATCCAGAAGAAGGTATTCGACATCCTTTACAAGGTTGCAGATATTCCTTTCTTGAAGGATTACAAAGACAAAATCACTGAACTCGTGGAGAAGGC AGAGAAGCAGCCAAACCTGACAATTGGTGTGCTTGTTTCTATTGTGGTTATCATCCTCACAATTTTCGCGAAGCTAATTTTCGGCGGAAAGAAGCCTGCC AAAGTTGAGAAGAAGCCGGCAGCTGCCGCTGCGGAGACCTCGAGTAAAGAGGGAAGCAACGGAGAGAAAGAGGAAGAAGAGAAGGAGGGGAACACGACGG CCGCTCCTCGCCGGAGGACAACCAGGCGCGAGTGA
AA sequence Show only first row Show all	>Lus10032521 pacid=23146350 polypeptide=Lus10032521 locus=Lus10032521.g ID=Lus10032521.BGIv1.0 annot-version=v1.0 MVRANKLLQVSMRLALLSVVVALVSQAPQLRAAGDNAILFESFDEPFEGRWIVSEKDDYQGVWKHSKSEGHDDYGLLVSEKARKYAIVTELEKAADLQDG TTVLQFETRLQNGLECGGAYLKYLRPQEAGWIAKGFNNDSPYSIMFGPDKCGATNKVHFILKHKNPKSGEYVEHHLKFPPSVPSDKLTHVYTAILKPDNE VRILIDGEEKKKANFLSSEDFEPALIPAKTIPDPDDKKPEDWDERAKIPDPKAVKPEDWDEEAPMEIEDVDAVKPEGWLDDEPEEVDDPEATKPEDWDDE EDGEWEAPKIDNPKCETSPGCGEWKRPMKSNPAYKGKWHAPMIDNPSYKGIWKPRDIPNPDFFELDAPNFEPIAAVGIEIWTMQDGILFDNVLIAKSEEE ATSVRDELWKPKFDAEKEKQNAEEAAATGSDGLAGIQKKVFDILYKVADIPFLKDYKDKITELVEKAEKQPNLTIGVLVSIVVIILTIFAKLIFGGKKPA KVEKKPAAAAAETSSKEGSNGEKEEEEKEGNTTAAPRRRTTRRE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61790		CNX1, ATCNX1	calnexin 1 (.1)		Lus10032521 [exp]	0	1
AT1G56340		AtCRT1a, CRT1	calreticulin 1a (.1.2)		Lus10010923 [exp]	1.4	0.9533
AT1G56340		AtCRT1a, CRT1	calreticulin 1a (.1.2)		Lus10031410 [exp]	2.2	0.9080
AT5G42020		BIP2, BIP	luminal binding protein, Heat ...		Lus10032430 [exp]	2.4	0.9413
AT5G61790		CNX1, ATCNX1	calnexin 1 (.1)		Lus10043021 [exp]	2.4	0.9357
AT1G67325			Ran BP2/NZF zinc finger-like s...		Lus10037029 [exp]	4.5	0.8822
AT3G16200			unknown protein		Lus10006829 [exp]	4.9	0.9272
AT1G26460			Tetratricopeptide repeat (TPR)...		Lus10026663 [exp]	12.8	0.8901
AT1G27600		IRX9-L, I9H	IRREGULAR XYLEM 9-LIKE, IRREGU...		Lus10032817 [exp]	13.0	0.9036
AT4G00740		QUA3	QUASIMODO 3, S-adenosyl-L-meth...		Lus10000808 [exp]	14.4	0.8880
AT1G53240		mMDH1	mitochondrial malate dehydroge...		Lus10017939 [exp]	15.1	0.9061

Compare expression of checked genes

Lus10032521 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.