Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07320 203 / 1e-63 APC3 ATP/phosphate carrier 3, Mitochondrial substrate carrier family protein (.1) AT5G51050 193 / 1e-59 APC2 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) AT5G61810 177 / 1e-53 APC1 ATP/phosphate carrier 1, Mitochondrial substrate carrier family protein (.1.2) AT4G04720 53 / 1e-08 CPK21 calcium-dependent protein kinase 21 (.1) AT4G04740 52 / 3e-08 CPK23, ATCPK23 calcium-dependent protein kinase 23 (.1.2) AT4G21940 51 / 7e-08 CPK15 calcium-dependent protein kinase 15 (.1.2) AT3G20410 51 / 7e-08 CPK9 calmodulin-domain protein kinase 9 (.1) AT1G61950 51 / 1e-07 CPK19 calcium-dependent protein kinase 19 (.1) AT1G50700 49 / 3e-07 CPK33 calcium-dependent protein kinase 33 (.1) AT4G04710 49 / 5e-07 CPK22 calcium-dependent protein kinase 22 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043022 [exp] 275 / 3e-91 AT5G51050 758 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Lus10022431 [exp] 215 / 3e-68 AT5G51050 737 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Lus10016736 [exp] 212 / 3e-67 AT5G51050 749 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Lus10002075 [exp] 56 / 1e-09 AT4G04720 536 / 0.0 calcium-dependent protein kinase 21 (.1) Lus10021531 [exp] 52 / 6e-08 AT3G20410 831 / 0.0 calmodulin-domain protein kinase 9 (.1) Lus10017251 [exp] 52 / 6e-08 AT1G76040 807 / 0.0 calcium-dependent protein kinase 29 (.1.2) Lus10005619 [exp] 52 / 7e-08 AT1G76040 773 / 0.0 calcium-dependent protein kinase 29 (.1.2) Lus10040071 [exp] 52 / 7e-08 AT3G20410 825 / 0.0 calmodulin-domain protein kinase 9 (.1) Lus10017537 [exp] 51 / 1e-07 AT4G23650 803 / 0.0 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G108900 [exp] 209 / 4e-66 AT5G51050 725 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Potri.012G110700 [exp] 204 / 4e-64 AT5G51050 714 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Potri.004G015500 [exp] 57 / 8e-10 AT4G04720 797 / 0.0 calcium-dependent protein kinase 21 (.1) Potri.011G003400 [exp] 55 / 4e-09 AT4G04720 815 / 0.0 calcium-dependent protein kinase 21 (.1) Potri.002G017000 [exp] 54 / 8e-09 AT1G76040 758 / 0.0 calcium-dependent protein kinase 29 (.1.2) Potri.003G134000 [exp] 52 / 4e-08 AT4G23650 776 / 0.0 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1) Potri.001G097400 [exp] 51 / 1e-07 AT4G23650 781 / 0.0 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1) Potri.006G101300 [exp] 50 / 1e-07 AT3G51850 977 / 0.0 calcium-dependent protein kinase 13 (.1) Potri.006G199400 [exp] 44 / 3e-05 AT2G38910 899 / 0.0 calcium-dependent protein kinase 20 (.1) Potri.016G054600 [exp] 43 / 4e-05 AT3G57530 864 / 0.0 calcium-dependent protein kinase 32 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032523 pacid=23146248 polypeptide=Lus10032523 locus=Lus10032523.g ID=Lus10032523.BGIv1.0 annot-version=v1.0 ATGTCTCACGCCGTCGAACGCCAGCAGGGGATGCCTAAGATGGATGTGAATAAAGCAATCAAGAAGGCGGCGGCTGCGGGGGTGACCATGGACCACGTTC TGCTGGCGCTCAGGGAGACCAAGGAAGAGAGGGATGTCAGGATTAGGAGCTTGTTCAATTTCTTTGATCTGGCCAATTCTGGCTACTTGGATTACGTCCA GATTGAGACCGGTCTGTCCGCGCTTCAGATTCCGCCCGAGTATAAGTATGCCAAGGATTTGTTGAAGGTGTGTGACGCTAACAAAGATGGGAGGGTTGAT TACGTGGAGTTCAAGAGATACATGGATGCTAAAGAGCTGGAGCTGTACAGGATTTTCCAGGCTATTGATGTTGAACACAGCGGCTGCATTTTGCCCGAGG AGCTCTGGGATGCCCTTGTTACCGCTGGTACTGACCCCAACTCCTCTCTTTTTCTTGCTGATACCATTCGCATCATGTTATGTAAACTCATTGCGATCAA TGAATTCTTCCTTTACTGGAACCTTGTCTAG
AA sequence Show only first row Show all	>Lus10032523 pacid=23146248 polypeptide=Lus10032523 locus=Lus10032523.g ID=Lus10032523.BGIv1.0 annot-version=v1.0 MSHAVERQQGMPKMDVNKAIKKAAAAGVTMDHVLLALRETKEERDVRIRSLFNFFDLANSGYLDYVQIETGLSALQIPPEYKYAKDLLKVCDANKDGRVD YVEFKRYMDAKELELYRIFQAIDVEHSGCILPEELWDALVTAGTDPNSSLFLADTIRIMLCKLIAINEFFLYWNLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07320		APC3	ATP/phosphate carrier 3, Mitoc...		Lus10032523 [exp]	0	1
AT5G20300		Toc90	translocon at the outer envelo...		Lus10006471 [exp]	2.8	0.8925
AT5G51690		ACS12	1-amino-cyclopropane-1-carboxy...		Lus10015023 [exp]	4.9	0.8728
AT1G04860		ATUBP2, UBP2	ubiquitin-specific protease 2 ...		Lus10007121 [exp]	8.2	0.8960
AT5G15270			RNA-binding KH domain-containi...		Lus10033557 [exp]	8.4	0.8845
AT5G15270			RNA-binding KH domain-containi...		Lus10033556 [exp]	8.5	0.8450
AT2G42920			Pentatricopeptide repeat (PPR-...		Lus10007341 [exp]	9.2	0.8818
AT2G47230		ATDUF6	DOMAIN OF UNKNOWN FUNCTION 724...		Lus10004508 [exp]	9.4	0.8644
AT5G36930			Disease resistance protein (TI...		Lus10039850 [exp]	11.5	0.8246
AT4G28760			Protein of unknown function (D...		Lus10011912 [exp]	14.3	0.8892
AT5G11030		ALF4	aberrant lateral root formatio...		Lus10006197 [exp]	15.0	0.8429

Compare expression of checked genes

Lus10032523 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.