Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51040 210 / 9e-69 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043024 [exp] 372 / 9e-133 AT5G51040 202 / 1e-66 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G108300 [exp] 275 / 2e-94 AT5G51040 225 / 1e-75 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03937 [flax] [poplar] Sdh5 Flavinator of succinate dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10032526 pacid=23146399 polypeptide=Lus10032526 locus=Lus10032526.g ID=Lus10032526.BGIv1.0 annot-version=v1.0 ATGTCAGAATTTGTGTATATCATTGAACTAACACTCTCAAACACCCTCAATCAGAATGGTACAGAGCAGGATTCCGGCTGCCGTATAGAGCCAGCCGGCC GGCGGGGGGGNNNNNNNGCGGCCACCGGCGCCCGGCGGTTCCGGCAGCCAACAAGTGCGGCTTCCGAAATCAAGCTCCGACAGGATAGTGTTATTGACCT GAATTTCGGCTCGATGGCGAGCTTAAGAAGGTCTTTGGCAACTGTCCGCCGTCTCCTCAACTCCACGCCGGCGACTAATCGTACCTCTATCTCGCCAATT CCTTCCCAGTCCGTTTCCCTACAGGAATACGGTTTCTTCTTCTCTCGCTATTCGACTCTCAACAGCGATGATTCTGGATCGAATCGTATCGATCTCTCCA GCGACGAAAGCAGACGCCGTCTGTGTAACAGGTTGCTGTATAGAAGCAGGCAGAGAGGATACCTGGAATTGGATTTAGTGCTTGGGAAATGGGTTGAGGA GCACGTTCATTCCATGGACGAAACCAGGATTAAAGCTCTCGTTCATGTCCTTGATTTGGAAAACCCTGATCTGTGGAAGTGGCTAACTGGGCAGGAGCAA GCCCCTGAGGCTGTAGGCCAAAACCAGGTGTTCTGCGAAATACGTGATAAGGTGATGAACAATCTCAACAGCCATGCTGCTCCTGGTACGAGAGCGATTC CGGGACAGCCATGGGTTCGAGGATGGGATGACATCAAGAAGAGTGCAGGGGCACCTGTCGCTGGGAATCAGTAG
AA sequence Show only first row Show all	>Lus10032526 pacid=23146399 polypeptide=Lus10032526 locus=Lus10032526.g ID=Lus10032526.BGIv1.0 annot-version=v1.0 MSEFVYIIELTLSNTLNQNGTEQDSGCRIEPAGRRGXXXAATGARRFRQPTSAASEIKLRQDSVIDLNFGSMASLRRSLATVRRLLNSTPATNRTSISPI PSQSVSLQEYGFFFSRYSTLNSDDSGSNRIDLSSDESRRRLCNRLLYRSRQRGYLELDLVLGKWVEEHVHSMDETRIKALVHVLDLENPDLWKWLTGQEQ APEAVGQNQVFCEIRDKVMNNLNSHAAPGTRAIPGQPWVRGWDDIKKSAGAPVAGNQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51040			unknown protein		Lus10032526 [exp]	0	1
AT5G13070			MSF1-like family protein (.1)		Lus10031832 [exp]	6.2	0.8394
AT4G14710		ATARD2	RmlC-like cupins superfamily p...		Lus10039375 [exp]	15.7	0.8478
AT2G05830			NagB/RpiA/CoA transferase-like...		Lus10008417 [exp]	19.9	0.8117
AT3G15140			Polynucleotidyl transferase, r...		Lus10005381 [exp]	23.1	0.7862
AT4G32790			Exostosin family protein (.1)		Lus10000608 [exp]	30.7	0.7705
AT5G57860			Ubiquitin-like superfamily pro...		Lus10036598 [exp]	35.1	0.7701
AT3G59280		TXR1	THAXTOMIN A RESISTANT 1, Prote...		Lus10032532 [exp]	35.2	0.7751
AT2G34690		ACD11	ACCELERATED CELL DEATH 11, Gly...		Lus10023267 [exp]	36.7	0.7449
AT4G18930			RNA ligase/cyclic nucleotide p...		Lus10029278 [exp]	39.2	0.7841
AT1G14300			ARM repeat superfamily protein...		Lus10036742 [exp]	42.1	0.7839

Compare expression of checked genes

Lus10032526 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.