Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23760 243 / 6e-82 unknown protein AT4G14100 236 / 3e-79 transferases, transferring glycosyl groups (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043212 [exp] 387 / 2e-138 AT3G23760 243 / 5e-82 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G108200 [exp] 256 / 5e-87 AT3G23760 266 / 4e-91 unknown protein Potri.001G068800 [exp] 249 / 4e-84 AT3G23760 282 / 8e-98 unknown protein Potri.018G096056 [exp] 192 / 5e-62 AT3G23760 214 / 2e-71 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032527 pacid=23146237 polypeptide=Lus10032527 locus=Lus10032527.g ID=Lus10032527.BGIv1.0 annot-version=v1.0 ATGGCTGCCTCTGCTAGTGAATGCATCTCCCTCTACGCCGCCCTTCTCCTCCTCCTGTTCTTAACCTCCTCCTTCCTCGCCACGGAATCCTCTCCGGAAG ATCCAACCCCCGCGCCATGGCCTCTCCAATTCCACTCAGTACTCTTCATGAACAAAAGCAACGGCGGAGGCCTCCAAATGATCGACCTCTGGTACGACTG GCCCAACGGCCGCAACTTCAACATCATCCGCGACCAGCTCGGCGAGTCAGTCAAATACGACGCCGAATGGAACAACGGCACGTCCTTCATCTACACCCTC GGCGGCGACTCCTCCGCCGACCCGGAATGCAAAGTCCTCCACTTTGAAGTCGGCATCCTCCGACCTAATTGGCTCGACGGCGCCAATTACCTAGGTCAGC AATACTTCGACGGCTTCCTCTGCAATGTATGGGAGAAGGTCGATTTCATTTGGTACTACGAAGACGTCCTCACCAAACGTCCTGTCCATTGGACTTTCTA CACAGGGTACACTGCTCATGTGATGACATTTGATGTGGGAGCAGTGTTGGATGATGCTGGATGGCAGGCGCCACTGTCCTGCTTCTCCGACTCCGATCAG CAAGTGGAAAAGAAGAGCCTTCCTGGAATTGAAACTGTGGCTGGATTTAGATCCCTTCTCAGGCTGAACCATAGCAGTATTTGA
AA sequence Show only first row Show all	>Lus10032527 pacid=23146237 polypeptide=Lus10032527 locus=Lus10032527.g ID=Lus10032527.BGIv1.0 annot-version=v1.0 MAASASECISLYAALLLLLFLTSSFLATESSPEDPTPAPWPLQFHSVLFMNKSNGGGLQMIDLWYDWPNGRNFNIIRDQLGESVKYDAEWNNGTSFIYTL GGDSSADPECKVLHFEVGILRPNWLDGANYLGQQYFDGFLCNVWEKVDFIWYYEDVLTKRPVHWTFYTGYTAHVMTFDVGAVLDDAGWQAPLSCFSDSDQ QVEKKSLPGIETVAGFRSLLRLNHSSI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23760			unknown protein		Lus10032527 [exp]	0	1
AT3G56650			Mog1/PsbP/DUF1795-like photosy...		Lus10029785 [exp]	1.7	0.9379
AT1G14030			Rubisco methyltransferase fami...		Lus10036780 [exp]	5.7	0.9270
AT1G35680		RPL21C	chloroplast ribosomal protein ...		Lus10017912 [exp]	6.6	0.9319
AT3G43720			Bifunctional inhibitor/lipid-t...		Lus10008400 [exp]	6.9	0.9055
AT5G58250		EMB3143	EMBRYO DEFECTIVE 3143, unknown...		Lus10031946 [exp]	7.7	0.9169
					Lus10040882 [exp]	8.1	0.9228
AT4G26370			antitermination NusB domain-co...		Lus10013400 [exp]	9.8	0.9248
AT3G23760			unknown protein		Lus10043212 [exp]	9.8	0.9098
AT5G54190		PORA	protochlorophyllide oxidoreduc...		Lus10043090 [exp]	9.9	0.9162
AT5G58250		EMB3143	EMBRYO DEFECTIVE 3143, unknown...		Lus10035110 [exp]	10.2	0.9167

Compare expression of checked genes

Lus10032527 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.