Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35160 208 / 6e-60 SGD9, SUVH5 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) AT2G22740 189 / 5e-53 SDG23, SUVH6 SET DOMAIN PROTEIN 23, SU(VAR)3-9 homolog 6 (.1), SU(VAR)3-9 homolog 6 (.2) AT1G73100 174 / 7e-48 SDG19, SUVH3 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) AT5G04940 164 / 2e-44 SUVH1 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) AT5G47150 140 / 7e-38 YDG/SRA domain-containing protein (.1) AT5G13960 142 / 5e-37 SDG33, KYP, SUVH4 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) AT5G47160 139 / 5e-37 YDG/SRA domain-containing protein (.1) AT2G24740 140 / 7e-36 SUVH8, SDG21 SU\(VAR\)3-9 HOMOLOG 8, SET domain group 21 (.1) AT2G33290 114 / 2e-27 SDG3, ATSUVH2, SUVH2 SET DOMAIN-CONTAINING PROTEIN 3, SU(VAR)3-9 homolog 2 (.1) AT1G17770 108 / 2e-25 SDG17, SUVH7 SET DOMAIN PROTEIN 17, SU(VAR)3-9 homolog 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043211 [exp] 690 / 0 AT2G35160 192 / 3e-54 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10011011 [exp] 239 / 5e-70 AT2G35160 620 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10001011 [exp] 235 / 1e-68 AT2G35160 615 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10040150 [exp] 223 / 4e-65 AT2G35160 568 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10026137 [exp] 174 / 4e-48 AT1G73100 757 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Lus10008681 [exp] 169 / 3e-46 AT1G73100 738 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Lus10029470 [exp] 165 / 8e-45 AT1G73100 762 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Lus10003017 [exp] 143 / 4e-37 AT2G35160 251 / 1e-73 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10011049 [exp] 135 / 2e-34 AT2G22740 255 / 4e-75 SET DOMAIN PROTEIN 23, SU(VAR)3-9 homolog 6 (.1), SU(VAR)3-9 homolog 6 (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G083100 [exp] 218 / 8e-63 AT2G35160 676 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Potri.012G115500 [exp] 165 / 2e-45 AT2G35160 172 / 3e-46 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Potri.015G111884 [exp] 160 / 6e-45 AT2G35160 167 / 3e-45 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Potri.003G188700 [exp] 164 / 2e-44 AT1G73100 806 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Potri.001G036800 [exp] 162 / 7e-44 AT1G73100 796 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Potri.006G027600 [exp] 152 / 2e-40 AT5G04940 583 / 0.0 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) Potri.016G025300 [exp] 152 / 4e-40 AT5G04940 561 / 0.0 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) Potri.014G143900 [exp] 138 / 2e-35 AT5G13960 706 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Potri.008G173100 [exp] 137 / 8e-35 AT4G13460 750 / 0.0 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) Potri.010G064300 [exp] 134 / 7e-34 AT4G13460 772 / 0.0 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00856 [flax] [poplar] SET SET domain CL0178 [flax] [poplar] PUA PF02182 [flax] [poplar] SAD_SRA SAD/SRA domain
Representative CDS sequence Show only first row Show all	>Lus10032528 pacid=23146373 polypeptide=Lus10032528 locus=Lus10032528.g ID=Lus10032528.BGIv1.0 annot-version=v1.0 ATGGGGTACAGAACTCCTCCGCCGGAGACGGTCAACGAGAAGAAGAGAAAAAGCGGGATGATGATGACATTCATATCCGATGCAGCAGAAGAGCGTGCCA TTCACGCGCGGAAGAGAGTCCAAGAAATCATCAGGCTCTACAGGGAACAACTCGACACTCTGCAGAAGAAAAGCCAGGGGAAAAAAGCTTACGATTTATA TCTCGCGGCAGCGACATTACTCCAACGAGCTGGAATATCCATGGACAAACGGAAAAGACTCGGTTCGATTCCGGGAGTCGAAATTGGAGACCAGTTCCGA TCGAGAGCCGAGATGAAAGTGATCGGGCTCCACTGCCAGTACATGGCTGGTGTGGATTACAACAATGGAGTAGCTATCAGCATTGTGGCCAGTAAGCGTT ACTCCAACTTGATGCTGTCCTCTGACGTTCTTATATACTCGGGCCACGGAGGAAACCCTAACGTTCGAACGAGTGTTCGAGGTTCCATCGATGATCAGAA GCTCGAGAGAGGGAATCTCGCCCTGGCGAACAGCATGGAGGCGAGGAATCCAGTTCGTGTCATTCGATGTTTGAGTTCGAACAGGGCCGATTGTCAGGAT AGTGTTTATGTTTACGATGGATTGTACACTGTGGAGAGTGTACGGCAGGAACGAGATGAGTTTGGGAAGCTTGTGTTTAAGTTCAAGCTGATTCGGATTC CTGGTCAACCTCCTGTCGACATTGCAATTCCGGAAAAGAAGACGACGAAGAGATTGAAAAGGGAAGAGATACTTATAAAGAATGACATCTCGGAAGAGAA AGAAGGAATTGCTGTCTCGGTTGTGAACGGTTGGGACGATGAGAGGCCATCTCCTTTCAATTACGTCAATGTAGGATGCTGCTGCAAGTGCGAAAATGCG GTACCGATCAAGTTTCAGTTTGAGGTTTTCAGGACGCAGGACGATGTCAAGGGCTGGGGATTGAGGTCGAGGCAGTACATTTCGTCAGGAAGTTTGATCT GTGAGTACGTGGGTGAATACAAGGAAGTGAGGAAGGATGGAATCAGGTATCGTCTCGACATCGGTGGTGTTTCTGGCGGAAAAGGATGCTATTCGATCAT CGATGCGACTCGATATGGGAATCTTGGAAGATTCATCAACCAGAGCAACATGAATCCGAATCTGAAAGTGGAGAAGGTTGACTGTCGGGGTGACGGCTGC AGGGTGCCACGTGAGATGATATATGCTGCCAAGGATATTCCTCCTCGCCGAGAGATGACTTTGCAAATGAAATAG
AA sequence Show only first row Show all	>Lus10032528 pacid=23146373 polypeptide=Lus10032528 locus=Lus10032528.g ID=Lus10032528.BGIv1.0 annot-version=v1.0 MGYRTPPPETVNEKKRKSGMMMTFISDAAEERAIHARKRVQEIIRLYREQLDTLQKKSQGKKAYDLYLAAATLLQRAGISMDKRKRLGSIPGVEIGDQFR SRAEMKVIGLHCQYMAGVDYNNGVAISIVASKRYSNLMLSSDVLIYSGHGGNPNVRTSVRGSIDDQKLERGNLALANSMEARNPVRVIRCLSSNRADCQD SVYVYDGLYTVESVRQERDEFGKLVFKFKLIRIPGQPPVDIAIPEKKTTKRLKREEILIKNDISEEKEGIAVSVVNGWDDERPSPFNYVNVGCCCKCENA VPIKFQFEVFRTQDDVKGWGLRSRQYISSGSLICEYVGEYKEVRKDGIRYRLDIGGVSGGKGCYSIIDATRYGNLGRFINQSNMNPNLKVEKVDCRGDGC RVPREMIYAAKDIPPRREMTLQMK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35160		SGD9, SUVH5	SET DOMAIN-CONTAINING PROTEIN ...		Lus10032528 [exp]	0	1
AT5G13150		ATEXO70C1	exocyst subunit exo70 family p...		Lus10011334 [exp]	1.4	0.9655
AT2G47940		EMB3117, DEGP2	EMBRYO DEFECTIVE 3117, DEGP pr...		Lus10005931 [exp]	1.7	0.9642
AT3G58530			RNI-like superfamily protein (...		Lus10012294 [exp]	2.0	0.9636
AT5G07280		EXS, EMS1	EXTRA SPOROGENOUS CELLS, EXCES...		Lus10014996 [exp]	4.0	0.9672
AT2G05760			Xanthine/uracil permease famil...		Lus10030014 [exp]	6.5	0.9494
AT3G07610		IBM1	increase in bonsai methylation...		Lus10002391 [exp]	7.2	0.9400
AT5G14070		ROXY2	Thioredoxin superfamily protei...		Lus10023295 [exp]	7.7	0.9492
AT2G45340			Leucine-rich repeat protein ki...		Lus10004032 [exp]	7.9	0.9375
AT2G35640	Trihelix		Homeodomain-like superfamily p...		Lus10040628 [exp]	8.1	0.9634
AT3G07610		IBM1	increase in bonsai methylation...		Lus10027890 [exp]	8.9	0.9541

Compare expression of checked genes

Lus10032528 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.