Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51020 315 / 4e-109 CAA33, CRL constitutive activator of AAA-ATPase, crumpled leaf (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043210 [exp] 436 / 1e-156 AT5G51020 393 / 1e-139 constitutive activator of AAA-ATPase, crumpled leaf (.1) Lus10016734 [exp] 353 / 7e-124 AT5G51020 433 / 2e-155 constitutive activator of AAA-ATPase, crumpled leaf (.1) Lus10022429 [exp] 330 / 2e-114 AT5G51020 417 / 2e-148 constitutive activator of AAA-ATPase, crumpled leaf (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G109800 [exp] 339 / 2e-118 AT5G51020 438 / 4e-157 constitutive activator of AAA-ATPase, crumpled leaf (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0116 [flax] [poplar] Calycin PF06206 [flax] [poplar] CpeT CpeT/CpcT family (DUF1001)
Representative CDS sequence Show only first row Show all	>Lus10032529 pacid=23146226 polypeptide=Lus10032529 locus=Lus10032529.g ID=Lus10032529.BGIv1.0 annot-version=v1.0 ATGGGAACGAGCTCTGGCTCAGATAAGGACGACTCCGATGGATGGGGCAAAACTCAGGGACTGGTGGTGAAGACGCTGATTTTGATCGGAGGTGCCTTTC TGGTGAAGCGGTTTACTAAATCCACTACACGTTGGGACCATGCTAACCACGTTTCCCAATCGCTCTCCGGTGAAAAAGGAGCTTCCATGCCTTTGTATCT TAGTTGCAGGAAGGAAGTTGGAGAGACGATTATGTGTCCTGCTGCTGAAATGGTTGATGGTACACAGGCATTTTGGCGCAATCCTCAGAAACCCTTTCGG CAAAGGTTCTACATGGTGAAGCCTTGCCCAAAGGAGTTGAAATGTGATGTGGAGGTAAGCACTTATGCAATTAGGGATGCAGATGAGTACCTAAATTTCT GTGATCGTCTGAGAGATCAACGACCACGTCCTGAAGAAGTAATTAGTGGCATTGCAGAACAGCTCAGTACATTACATCTAAAACGATGTGATCGTGGAAA ACGCTGCATGTACAAAGGTTCGACGCCTCCTGGAGGATTCCCTAACACATGGAATGACGCCACTTATTGTACCTCGGAACTTTCCGTATTGAAGAACAAC GAAGTGCATATGTGGGACAGGTGTTACGATGATGATGGAAACCAGGTTTGGGGATCAAGGGAAAGTCCATACGAGTTCAAGCCTGCACCAGGTTCTTCTG GCAGTCTGAATGGGATTTTCTCTTCATTGAATCTCAGTCCACTAGCAAAAAGATGA
AA sequence Show only first row Show all	>Lus10032529 pacid=23146226 polypeptide=Lus10032529 locus=Lus10032529.g ID=Lus10032529.BGIv1.0 annot-version=v1.0 MGTSSGSDKDDSDGWGKTQGLVVKTLILIGGAFLVKRFTKSTTRWDHANHVSQSLSGEKGASMPLYLSCRKEVGETIMCPAAEMVDGTQAFWRNPQKPFR QRFYMVKPCPKELKCDVEVSTYAIRDADEYLNFCDRLRDQRPRPEEVISGIAEQLSTLHLKRCDRGKRCMYKGSTPPGGFPNTWNDATYCTSELSVLKNN EVHMWDRCYDDDGNQVWGSRESPYEFKPAPGSSGSLNGIFSSLNLSPLAKR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51020		CAA33, CRL	constitutive activator of AAA-...		Lus10032529 [exp]	0	1
AT2G32230		PRORP1	proteinaceous RNase P 1 (.1)		Lus10014928 [exp]	1.4	0.9433
AT4G24740		AME1, AFC2	FUS3-complementing gene 2 (.1....		Lus10043309 [exp]	2.2	0.9470
AT1G28560		SRD2	SHOOT REDIFFERENTIATION DEFECT...		Lus10041957 [exp]	2.8	0.9404
AT5G11270		OCP3	overexpressor of cationic pero...		Lus10002899 [exp]	3.0	0.9272
AT1G16670			Protein kinase superfamily pro...		Lus10042851 [exp]	4.9	0.9415
AT1G15200			protein-protein interaction re...		Lus10003959 [exp]	6.6	0.9211
AT1G05620		NSH2, URH2	nucleoside hydrolase 2, uridin...		Lus10022062 [exp]	8.9	0.9338
AT1G04390			BTB/POZ domain-containing prot...		Lus10002546 [exp]	9.2	0.9087
AT3G47160			RING/U-box superfamily protein...		Lus10005859 [exp]	9.5	0.9144
					Lus10006006 [exp]	13.4	0.9225

Compare expression of checked genes

Lus10032529 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.