Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50990 625 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G48910 431 / 2e-145 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G66520 414 / 9e-139 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21065 405 / 6e-136 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT4G37380 401 / 8e-134 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G62890 394 / 1e-131 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G14820 395 / 3e-130 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G59720 387 / 3e-128 CRR28 CHLORORESPIRATORY REDUCTION28, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G40405 385 / 8e-128 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G23330 383 / 1e-125 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000230 [exp] 731 / 0 AT5G50990 516 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10043208 [exp] 725 / 0 AT5G50990 514 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029344 [exp] 407 / 4e-136 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014298 [exp] 393 / 2e-130 AT5G66520 748 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024971 [exp] 392 / 3e-130 AT4G37380 772 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017446 [exp] 396 / 2e-129 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010909 [exp] 391 / 2e-129 AT5G66520 537 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026006 [exp] 390 / 2e-129 AT5G66520 746 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031423 [exp] 391 / 3e-129 AT5G66520 538 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G109300 [exp] 700 / 0 AT5G50990 616 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G065500 [exp] 428 / 2e-144 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G031600 [exp] 420 / 1e-139 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G012600 [exp] 409 / 3e-136 AT2G29760 540 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G191200 [exp] 407 / 3e-136 AT5G48910 852 / 0.0 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G001000 [exp] 405 / 3e-135 AT4G21065 793 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.006G252400 [exp] 398 / 1e-134 AT4G21065 496 / 8e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.010G086200 [exp] 403 / 2e-133 AT4G14820 840 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G050200 [exp] 400 / 2e-133 AT4G37380 817 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G105700 [exp] 401 / 5e-133 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10032531 pacid=23146338 polypeptide=Lus10032531 locus=Lus10032531.g ID=Lus10032531.BGIv1.0 annot-version=v1.0 ATGGCGCACTCAGATTATCAAGTATTCTGTCATCTCCTGGAAGCCTGCAAACTCTCCTCAGATATCAGAACCGCAGCTGAAACACACACCAGAGTCATAA GATTTGGGTACGGAACCCACCCTTCTCTACTGGCTTCGCTTATATCAGTTTACGCTCACTGCGACCGACTCAATTTCGCTTACAAAGTCGTTCGCCAGGT CTTTAGTTGGGATTTTGATCTGGTTGTTTTGAATAAGACGCTGCATAGTTTCATGACATCCAGAGATTCAGATTTGGCACGGAAGGTGTTCGATAATATG CCTGGCCGAGATGTGGTGACTTGGAACTCGATGATTGGAGGTTATGTTAAAAACGGTCGATTTGAGGAGGCCGTCAGGCTTTTCAAATTGATGCTTAGTT CGAATGTCAATCCGGATAAGTTCACATTTGCATCCGTGATGCCTGCCTGTGCAAAGCTTGGAAGTCTCCCCCAGGCTCAGTGGCTGCATCAGGTGATGGT TGAGAAGAGAGTTGAAGTGAATTCCATTCTAGTTGCAGCTATGATAGACATGTATTCAAAATGCGGCGGAATCGATGCTGCTAAAAGTATATTCGAGAGG GTTCGGCGGGATGATGCTTCGATTTGGAACTCGATGATCAATGGCTTTGCAATTCATGGCTTTGCCTTGGATGCAATTGCTTTGTTTTCAAAGATGGAGT CTGAAGATGTTTCTCCGGATAGTATAACATTTCTAGGACTTCTCACTGCGTGTAGTCATTCCGGTTTGGTGAAAGAAGGTAGGCATTACTTCGGTTTGAT GAAAACTCGGTATTCGGTTGAACCACAGCGCGAGCATTATGGAGCCCTGGTTGATCTCTTGGGTCGAGCTGGATTTTTACAGGAAGCTCATGATGTGATC ATGTCAATGCCGATTGAGCCGGATGTTGTTATATGGAGGGCCCTTCTTAGTGCTTCTAGAATGCACAAAGCCCCCGAAATCGGTGAGCTTGCCATTGCTA ATATATCGCGTCTGAAAAGTGGCGATTATGTATTGCTTTCAAACATATACTGCTCCCAACTGAAATGGGACAGTGCGCAGAGAGTTAGGGAGATGATGAA GAAGCATGGGGTGAGTAAGAAGAAGGGAATTAGTTGGTTTGAATTGGGTGGGGGCTTTCACCATTTCAAGTCTGGTGATAGATCCCATCCTGAGATAGCT GCGGTGTACAAAGTTCTCAGAGGACTGATTGAAAAGGCGAAGTTGTTTGGGTTTGTCCCCAAGACTGAGTTGGTCATGATGGATGTGTCGGAAGAGGAGA AGGAGGAGAATCTTCATCATCACAGTGAAAAGTTGGCGTTGGCGTACGGGATTCTGAAGACTGCTCCCGGAACAGAAATCAGAATCTCGAAGAATCTTCG AATCTGTGACGACTGCCACAGTTGGTTTAGATTAGTTTCGATGACGTTGAACCGAGTGATTCTTGTTAGAGATCGGATCCGGTTTCACAGGTTTGAAGGG GGATCGTGTTCTTGTGGAGATTATTGGTAA
AA sequence Show only first row Show all	>Lus10032531 pacid=23146338 polypeptide=Lus10032531 locus=Lus10032531.g ID=Lus10032531.BGIv1.0 annot-version=v1.0 MAHSDYQVFCHLLEACKLSSDIRTAAETHTRVIRFGYGTHPSLLASLISVYAHCDRLNFAYKVVRQVFSWDFDLVVLNKTLHSFMTSRDSDLARKVFDNM PGRDVVTWNSMIGGYVKNGRFEEAVRLFKLMLSSNVNPDKFTFASVMPACAKLGSLPQAQWLHQVMVEKRVEVNSILVAAMIDMYSKCGGIDAAKSIFER VRRDDASIWNSMINGFAIHGFALDAIALFSKMESEDVSPDSITFLGLLTACSHSGLVKEGRHYFGLMKTRYSVEPQREHYGALVDLLGRAGFLQEAHDVI MSMPIEPDVVIWRALLSASRMHKAPEIGELAIANISRLKSGDYVLLSNIYCSQLKWDSAQRVREMMKKHGVSKKKGISWFELGGGFHHFKSGDRSHPEIA AVYKVLRGLIEKAKLFGFVPKTELVMMDVSEEEKEENLHHHSEKLALAYGILKTAPGTEIRISKNLRICDDCHSWFRLVSMTLNRVILVRDRIRFHRFEG GSCSCGDYW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50990			Tetratricopeptide repeat (TPR)...		Lus10032531 [exp]	0	1
AT2G44020			Mitochondrial transcription te...		Lus10004535 [exp]	2.8	0.7746
AT1G50600	GRAS	SCL5	scarecrow-like 5 (.1)		Lus10003773 [exp]	9.5	0.7552
AT5G23050		AAE17	acyl-activating enzyme 17 (.1)		Lus10027257 [exp]	11.2	0.7172
AT4G37170			Pentatricopeptide repeat (PPR)...		Lus10036921 [exp]	14.4	0.6355
AT1G10150		ATPP2-A10	Carbohydrate-binding protein (...		Lus10012487 [exp]	16.1	0.7319
AT3G18310			unknown protein		Lus10027301 [exp]	18.0	0.6671
AT3G62240	C2H2ZnF		RING/U-box superfamily protein...		Lus10004521 [exp]	19.3	0.6683
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10015109 [exp]	19.3	0.7121
AT5G51410			LUC7 N_terminus domain-contain...		Lus10038924 [exp]	20.2	0.6949
AT5G41950			Tetratricopeptide repeat (TPR)...		Lus10018184 [exp]	20.7	0.7414

Compare expression of checked genes

Lus10032531 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.