Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59280 114 / 4e-33 TXR1 THAXTOMIN A RESISTANT 1, Protein Transporter, Pam16 (.1) AT5G61880 108 / 8e-31 Protein Transporter, Pam16 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043207 [exp] 157 / 5e-49 AT3G59280 156 / 2e-49 THAXTOMIN A RESISTANT 1, Protein Transporter, Pam16 (.1) Lus10024046 [exp] 0 / 1 AT5G10260 405 / 3e-145 RAB GTPase homolog H1E (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G106600 [exp] 119 / 9e-35 AT3G59280 171 / 1e-56 THAXTOMIN A RESISTANT 1, Protein Transporter, Pam16 (.1) Potri.012G108600 [exp] 116 / 8e-34 AT3G59280 171 / 1e-56 THAXTOMIN A RESISTANT 1, Protein Transporter, Pam16 (.1) Potri.014G151200 [exp] 114 / 6e-33 AT3G59280 187 / 7e-63 THAXTOMIN A RESISTANT 1, Protein Transporter, Pam16 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF03656 [flax] [poplar] Pam16 Pam16
Representative CDS sequence Show only first row Show all	>Lus10032532 pacid=23146215 polypeptide=Lus10032532 locus=Lus10032532.g ID=Lus10032532.BGIv1.0 annot-version=v1.0 ATGGCGATGTTTCACCTAGACGAGAGGATGATGATGTGGAATGAGAAACGGACGCACTGTGGATGGTCGAAGAAGACTAAGTGGCAGCGTTCGAGGTATC TAGGAACACCCAAAAAACTTGGCATCGGCAAGCTTGAACACCAGGTCCTGCTAGGAGAAGTAATACAACGACAGAGACTTGCTCGGAGACTTAACCCCTC CAGGCGTTTGAAGTTTTGCGTGTCCCCAGTTCGGGCTCCAATAGCTGTTTCTGAAATTCTGATATTGCATTCTAACCACTACCGCCTTCTGATCCTCATA TACCATGATGCATCAAAGAATGGGGTTGCACAAGAAGCAATGCAGAACGTGAAGAGAGTAAGTAAGGGGATGAGCGAGTCGGAAGCGAGGCAGATTCTAG GAGTTTCTGAGAATGCATCTTGGGAGGAGGTTTTGAAGAAATACGATGCGTTGTTTGAGAACAACGCGAAGAACGGCAGCTTCTACCTCCAGTCGAAGGT CTTCAGAGCTAAAGAATGCCTAGAAAGCGCAGGCAAGAAGGATGGCGGTGGTGAATGA
AA sequence Show only first row Show all	>Lus10032532 pacid=23146215 polypeptide=Lus10032532 locus=Lus10032532.g ID=Lus10032532.BGIv1.0 annot-version=v1.0 MAMFHLDERMMMWNEKRTHCGWSKKTKWQRSRYLGTPKKLGIGKLEHQVLLGEVIQRQRLARRLNPSRRLKFCVSPVRAPIAVSEILILHSNHYRLLILI YHDASKNGVAQEAMQNVKRVSKGMSESEARQILGVSENASWEEVLKKYDALFENNAKNGSFYLQSKVFRAKECLESAGKKDGGGE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G59280		TXR1	THAXTOMIN A RESISTANT 1, Prote...		Lus10032532 [exp]	0	1
AT3G15140			Polynucleotidyl transferase, r...		Lus10005381 [exp]	1.7	0.8554
AT2G02970			GDA1/CD39 nucleoside phosphata...		Lus10030471 [exp]	4.0	0.8293
AT3G01170			Ribosomal protein L34e superfa...		Lus10005234 [exp]	4.2	0.8506
AT1G17455		ELF4-L4	ELF4-like 4 (.1.2)		Lus10000371 [exp]	5.7	0.8341
AT1G12060		ATBAG5	BCL-2-associated athanogene 5 ...		Lus10010486 [exp]	6.5	0.8307
AT3G10860			Cytochrome b-c1 complex, subun...		Lus10019118 [exp]	6.9	0.8311
AT1G13810			Restriction endonuclease, type...		Lus10017632 [exp]	7.0	0.7773
AT1G71180			6-phosphogluconate dehydrogena...		Lus10001349 [exp]	7.1	0.8400
AT1G67350			unknown protein		Lus10015785 [exp]	8.8	0.8172
AT1G79590		ATSYP52, SYP52	syntaxin of plants 52 (.1.2)		Lus10016577 [exp]	9.5	0.8320

Compare expression of checked genes

Lus10032532 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.