Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61900 387 / 6e-131 CPN1, BON1 COPINE 1, BONZAI 1, Calcium-dependent phospholipid-binding Copine family protein (.1.3) AT5G07300 375 / 4e-126 BON2 BONZAI 2, Calcium-dependent phospholipid-binding Copine family protein (.1) AT5G61910 389 / 3e-124 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3), DCD (Development and Cell Death) domain protein (.4) AT1G08860 358 / 1e-119 BON3 BONZAI 3, Calcium-dependent phospholipid-binding Copine family protein (.1) AT1G67800 84 / 2e-17 Copine (Calcium-dependent phospholipid-binding protein) family AT5G14420 76 / 6e-15 RGLG2 RING domain ligase2 (.1.2.3.4) AT3G01650 75 / 1e-14 RGLG1 RING domain ligase1 (.1) AT1G79380 72 / 1e-13 Ca(2)-dependent phospholipid-binding protein (Copine) family (.1) AT5G63970 66 / 1e-11 Copine (Calcium-dependent phospholipid-binding protein) family (.1), Copine (Calcium-dependent phospholipid-binding protein) family (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043206 [exp] 473 / 5e-165 AT5G61900 684 / 0.0 COPINE 1, BONZAI 1, Calcium-dependent phospholipid-binding Copine family protein (.1.3) Lus10033826 [exp] 368 / 4e-123 AT1G08860 880 / 0.0 BONZAI 3, Calcium-dependent phospholipid-binding Copine family protein (.1) Lus10018973 [exp] 121 / 8e-31 AT1G08860 403 / 4e-137 BONZAI 3, Calcium-dependent phospholipid-binding Copine family protein (.1) Lus10014587 [exp] 85 / 9e-18 AT3G01650 517 / 0.0 RING domain ligase1 (.1) Lus10032097 [exp] 84 / 2e-17 AT3G01650 514 / 0.0 RING domain ligase1 (.1) Lus10022294 [exp] 80 / 4e-16 AT3G01650 608 / 0.0 RING domain ligase1 (.1) Lus10033043 [exp] 71 / 3e-13 AT3G01650 492 / 4e-172 RING domain ligase1 (.1) Lus10003654 [exp] 71 / 4e-13 AT3G01650 376 / 2e-127 RING domain ligase1 (.1) Lus10036879 [exp] 71 / 5e-13 AT3G01650 555 / 0.0 RING domain ligase1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G108200 [exp] 407 / 8e-139 AT5G61910 827 / 0.0 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3), DCD (Development and Cell Death) domain protein (.4) Potri.015G106400 [exp] 400 / 7e-136 AT5G61910 796 / 0.0 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3), DCD (Development and Cell Death) domain protein (.4) Potri.013G029100 [exp] 369 / 9e-124 AT1G08860 857 / 0.0 BONZAI 3, Calcium-dependent phospholipid-binding Copine family protein (.1) Potri.003G055501 [exp] 116 / 2e-31 AT5G07300 95 / 3e-23 BONZAI 2, Calcium-dependent phospholipid-binding Copine family protein (.1) Potri.008G081300 [exp] 78 / 1e-15 AT1G79380 518 / 0.0 Ca(2)-dependent phospholipid-binding protein (Copine) family (.1) Potri.001G342200 [exp] 77 / 4e-15 AT5G14420 572 / 0.0 RING domain ligase2 (.1.2.3.4) Potri.010G049600 [exp] 76 / 7e-15 AT5G14420 580 / 0.0 RING domain ligase2 (.1.2.3.4) Potri.016G003000 [exp] 76 / 7e-15 AT5G14420 500 / 2e-176 RING domain ligase2 (.1.2.3.4) Potri.008G183600 [exp] 76 / 9e-15 AT5G14420 571 / 0.0 RING domain ligase2 (.1.2.3.4) Potri.010G174800 [exp] 75 / 1e-14 AT1G79380 535 / 0.0 Ca(2)-dependent phospholipid-binding protein (Copine) family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain CL0128 [flax] [poplar] vWA-like PF07002 [flax] [poplar] Copine Copine
Representative CDS sequence Show only first row Show all	>Lus10032533 pacid=23146305 polypeptide=Lus10032533 locus=Lus10032533.g ID=Lus10032533.BGIv1.0 annot-version=v1.0 ATGGGGAACTGCTTCTCCGATGAGGTCGAAGGCAGATCGGCAGTTGGCGGCACTGGTGCTTCGTCTGCCGGCGCCGGTGCTAATGATGCGGTCGATGAAT TCCTCAGGTATCGAGGCTTCCACGGACTCTTCTCTCAGATCGAGTTTCTTAACCTAGAAGTTTTCTTCCTTCAGAGTGACCCAATGGTGGTTGTTTATAC AAAAGGAAGAGATGGAGCCCTCACTGAAGTTTTCCGCACCGAGGTCGTTCTTAATTCATTGAATCCATCTTGGATTGCAAAATGTACGGTCACATATCAG TTTGAAATTGTTCAAAATTTGGTGTTTCATGTGTATGACATAGACACTCAGTTTCACAATGTTGATGTGAAGATGCTTAAGCTAGAGGAGCAGCAATTTC TTGGTGAAGCTTCCACCATATTGTCTCAGGTCTTAAAAAGCCAGCTTTTCGTGGACAAATATTCAGAAAGTACGCAACATACCTTCCTAGATTACCTGAA AGGGGGATTTGAACTGAACTTCATGGTGGCTGTTGACTTCACAGCTGCCAAACAATTTCAGGCAATCTTGGAGGTTGGAGAGGTGTTGAAGTTTTACGAT TCAGATCAACGATTTCCTGCATGGGGATTTGGAGCACGGCCCATTGACGGTCCTGTCTCTCATTGCTTCAACTTGAATGGAAGTAATTACAACCATGAGG TGGAAGGGCTCCATGGAATTCTGATGGCTTATTCAAATGCCCTCTACAATGTTTCCCTTGCAGGGCCAACACTTTTCGGACACGTAATCACTAAGGCCGC AAGCATTGCAAAAAAATCTCTCGAAAATGGAGAGAGAAAGTACTTCGTTTTGTTGATCATAACGGATGGGGTTGTAACAGATCTTCAAGAAACCAAAGAC GCCATAGTCCAAGCTTCGGACCTTCCCCTTTCCATCCTTATTGTAGGTGTTGGAGGAGCCGACTTCAGAGAAATGGAGATTTTAGATGGTGATAAAGGAG AAAGACTTGAAAGCTCAACTAGTCGAGTTGCTACACGTGATATAGTTCAGTTCGTACCAATGCGAGACGTACAAAATGGAGAGATGTCTGTTGTGCAAGA ACTTCTAGCCGAATTACCGACGCAATTTCTATCCTATGTGCGGTCCAGAAAGCTGAAGCCATAG
AA sequence Show only first row Show all	>Lus10032533 pacid=23146305 polypeptide=Lus10032533 locus=Lus10032533.g ID=Lus10032533.BGIv1.0 annot-version=v1.0 MGNCFSDEVEGRSAVGGTGASSAGAGANDAVDEFLRYRGFHGLFSQIEFLNLEVFFLQSDPMVVVYTKGRDGALTEVFRTEVVLNSLNPSWIAKCTVTYQ FEIVQNLVFHVYDIDTQFHNVDVKMLKLEEQQFLGEASTILSQVLKSQLFVDKYSESTQHTFLDYLKGGFELNFMVAVDFTAAKQFQAILEVGEVLKFYD SDQRFPAWGFGARPIDGPVSHCFNLNGSNYNHEVEGLHGILMAYSNALYNVSLAGPTLFGHVITKAASIAKKSLENGERKYFVLLIITDGVVTDLQETKD AIVQASDLPLSILIVGVGGADFREMEILDGDKGERLESSTSRVATRDIVQFVPMRDVQNGEMSVVQELLAELPTQFLSYVRSRKLKP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61910			DCD (Development and Cell Deat...		Lus10032533 [exp]	0	1
AT5G35980		YAK1	yeast YAK1-related gene 1 (.1....		Lus10009542 [exp]	1.0	0.8987
AT3G51830		ATG5, SAC8	SAC domain-containing protein ...		Lus10025267 [exp]	10.2	0.8535
AT1G07650			Leucine-rich repeat transmembr...		Lus10031374 [exp]	12.0	0.8319
AT2G30880			Pleckstrin homology (PH) domai...		Lus10029819 [exp]	16.7	0.8348
AT1G15860			Domain of unknown function (DU...		Lus10039198 [exp]	33.3	0.8350
AT5G40450			unknown protein		Lus10022266 [exp]	34.1	0.7888
AT4G00060		MEE44	maternal effect embryo arrest ...		Lus10009279 [exp]	35.8	0.7774
AT4G39910		ATUBP3	ubiquitin-specific protease 3 ...		Lus10041705 [exp]	36.7	0.8198
AT1G17440		CKH1, TAF12b, E...	TBP-ASSOCIATED FACTOR 12B, ENH...		Lus10006528 [exp]	39.8	0.8213
AT1G12360		KEU	keule, Sec1/munc18-like (SM) p...		Lus10032196 [exp]	45.7	0.8232

Compare expression of checked genes

Lus10032533 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.