Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61910 142 / 8e-36 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3), DCD (Development and Cell Death) domain protein (.4) AT2G32910 116 / 2e-27 DCD (Development and Cell Death) domain protein (.1) AT3G11000 77 / 6e-15 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2) AT2G35140 75 / 5e-14 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3) AT5G42050 71 / 5e-13 DCD (Development and Cell Death) domain protein (.1) AT5G01660 68 / 8e-12 unknown protein AT3G27090 60 / 1e-09 DCD (Development and Cell Death) domain protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001728 [exp] 119 / 2e-28 AT2G32910 208 / 1e-57 DCD (Development and Cell Death) domain protein (.1) Lus10004128 [exp] 119 / 4e-28 AT2G32910 219 / 3e-60 DCD (Development and Cell Death) domain protein (.1) Lus10012220 [exp] 86 / 1e-17 AT5G01660 224 / 1e-66 unknown protein Lus10018316 [exp] 83 / 2e-16 AT2G35140 185 / 3e-48 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3) Lus10017137 [exp] 80 / 3e-15 AT4G19900 693 / 0.0 alpha 1,4-glycosyltransferase family protein (.1) Lus10018307 [exp] 69 / 7e-12 AT5G01660 276 / 3e-82 unknown protein Lus10032412 [exp] 67 / 9e-12 AT5G42050 359 / 1e-123 DCD (Development and Cell Death) domain protein (.1) Lus10023059 [exp] 67 / 1e-11 AT5G42050 355 / 8e-122 DCD (Development and Cell Death) domain protein (.1) Lus10012533 [exp] 62 / 2e-10 AT3G27090 432 / 5e-154 DCD (Development and Cell Death) domain protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G136300 [exp] 162 / 6e-45 AT5G61910 180 / 2e-50 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3), DCD (Development and Cell Death) domain protein (.4) Potri.013G029200 [exp] 122 / 1e-29 AT2G32910 187 / 3e-51 DCD (Development and Cell Death) domain protein (.1) Potri.005G042700 [exp] 119 / 1e-28 AT2G32910 198 / 3e-55 DCD (Development and Cell Death) domain protein (.1) Potri.005G043100 [exp] 119 / 1e-28 AT2G32910 201 / 6e-56 DCD (Development and Cell Death) domain protein (.1) Potri.015G122300 [exp] 76 / 2e-14 AT2G35140 211 / 4e-56 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3) Potri.016G127600 [exp] 73 / 2e-13 AT5G01660 628 / 0.0 unknown protein Potri.008G074200 [exp] 71 / 1e-12 AT5G01660 488 / 2e-164 unknown protein Potri.001G088800 [exp] 68 / 5e-12 AT5G42050 289 / 2e-95 DCD (Development and Cell Death) domain protein (.1) Potri.003G141900 [exp] 66 / 2e-11 AT5G42050 285 / 4e-94 DCD (Development and Cell Death) domain protein (.1) Potri.019G066100 [exp] 58 / 3e-09 AT3G27090 251 / 2e-83 DCD (Development and Cell Death) domain protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10539 [flax] [poplar] Dev_Cell_Death Development and cell death domain
Representative CDS sequence Show only first row Show all	>Lus10032534 pacid=23146428 polypeptide=Lus10032534 locus=Lus10032534.g ID=Lus10032534.BGIv1.0 annot-version=v1.0 ATGAAGCTCACGCTTCCATATTGGTTCTTGTTTGCTTTGCCAGTTGCTTTCAATAAGGACATACCCTGCAAATTTGGTTTAGATTTCTCTGCGGACCAGT GTTATGCAATGGTGACAGATATAAGTCATCTACATGTGAATGGGAGAATGGAGACCACTGATGGGAGTAATCTAATGGCCCATACATCTCATGCACTTCC TTCCCAAGTCCGTGGGGTTACTTCACAGAAATCAAGAAATCTGGAGTCAATCTCTGGTTTCATATTCATGTGTAACAGGCAGACGAAACCGCAGTGCTAT CAGTACCGAGTATTCGGGGTTCCTTTAGCTAAATTGAATGTTGTTGAGAAGATCAGGCCAGGAACTAAACTTTTCCTGTTTGATTTTGACGTAAAGCTTC TTTACGGTGTGTATGAGGCTATTACTTGCGGGATGAAGAATTTGGAACCTGCTGCATTTTCTGGGAATTTTCCTGCACAGGTCGGTTTCCGTATCGACAG AGATTGTCTGCCTTTGCATGAGAGTTTACTCAAACAAATAATCCAGGATAACTACCAGAAGGGAAAATTTTCTCAAGAGCTAAGTCACACACAAGTACAA GGCCTTTTATCTGCATTTCGACCATTTGGAGCGAGATCATTATCCGTGCCTTCTACATTGGCCCACAAATCTATGCCATTAGCAATGTCCACTACACCTG CCGAGGGCCAGTACCAGAAACAACAATGCCCGCCTCCTTTCCACTCCCATGAAACTAGGAATCATCTCGGCAATGGCGCAGTAGTATCAGATGCTCCTTT CTCAGTGCAAAATAATATGCAACCACAGCATGATTACTATAGAACCACGGAGAATGGGGTTTCTGCTCATTTTTCAAACACGCACGATCAAAGGTTCCAA TTTAGTCACACTCACATCCCAGCTGTCTCAGATGCTCAGTATTCTGTTCAGATGGATGAAGGCCAGCAATATGGATATTATACTCACCAATCAGTAGATC AGCACGGTCAACCAGCTCCTACTTTGCCTTACCCATATAATCCTTCCGGTGCTACTATTCAGCATGGTTATGTGCAGCCTGCCATTAATACTGAAACTAT TGAGCATAGAGTCCAACAACCACACGAGGCTTCTTCTCAACGACACTTTTATCCATCTTCATTGACCCAGTACAATTATCCACAAGGGCAACAAGGTTAC CCTGATTCTGCTGTTATCCAACAGCCAGAGGCTCCTGTGGATCCTTACTATCGTAATGGAGCTGGAACTGTAGCGGAGACTATCCCCAATTACCAACAAC ACTACGAGTGGAGCAATCAAGACAACTATGGGTATCAGCAATCACAAGGAAACAATGTGTATGGGTTGCAGCAAGGGAACACCCTTGAGCAGCAGCAATA TATTCAGTATACTCAACCCCATCAGCAGGGCGTAGTAGCTCAGACACTAATCGCTGCGACACAGTCTGGGGAGAACTCTCACATTTCTTCAGTGTCGTAT CAGCAATACCACCCATCGTAA
AA sequence Show only first row Show all	>Lus10032534 pacid=23146428 polypeptide=Lus10032534 locus=Lus10032534.g ID=Lus10032534.BGIv1.0 annot-version=v1.0 MKLTLPYWFLFALPVAFNKDIPCKFGLDFSADQCYAMVTDISHLHVNGRMETTDGSNLMAHTSHALPSQVRGVTSQKSRNLESISGFIFMCNRQTKPQCY QYRVFGVPLAKLNVVEKIRPGTKLFLFDFDVKLLYGVYEAITCGMKNLEPAAFSGNFPAQVGFRIDRDCLPLHESLLKQIIQDNYQKGKFSQELSHTQVQ GLLSAFRPFGARSLSVPSTLAHKSMPLAMSTTPAEGQYQKQQCPPPFHSHETRNHLGNGAVVSDAPFSVQNNMQPQHDYYRTTENGVSAHFSNTHDQRFQ FSHTHIPAVSDAQYSVQMDEGQQYGYYTHQSVDQHGQPAPTLPYPYNPSGATIQHGYVQPAINTETIEHRVQQPHEASSQRHFYPSSLTQYNYPQGQQGY PDSAVIQQPEAPVDPYYRNGAGTVAETIPNYQQHYEWSNQDNYGYQQSQGNNVYGLQQGNTLEQQQYIQYTQPHQQGVVAQTLIAATQSGENSHISSVSY QQYHPS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61910			DCD (Development and Cell Deat...		Lus10032534 [exp]	0	1
AT5G22760			PHD finger family protein (.1)		Lus10009383 [exp]	5.3	0.9170
AT4G11450			Protein of unknown function (D...		Lus10035493 [exp]	5.7	0.8838
AT3G60860			SEC7-like guanine nucleotide e...		Lus10009244 [exp]	6.8	0.8893
					Lus10010435 [exp]	10.6	0.8579
AT4G38430		ATROPGEF1, ROPG...	rho guanyl-nucleotide exchange...		Lus10025101 [exp]	11.0	0.8669
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Lus10033598 [exp]	11.8	0.8685
AT1G38065			O-fucosyltransferase family pr...		Lus10028080 [exp]	12.4	0.8617
AT4G20270		BAM3	BARELY ANY MERISTEM 3, Leucine...		Lus10038381 [exp]	16.9	0.8552
AT4G32620			Enhancer of polycomb-like tran...		Lus10041252 [exp]	18.7	0.8735
AT5G05240			Uncharacterised conserved prot...		Lus10029030 [exp]	19.0	0.8703

Compare expression of checked genes

Lus10032534 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.