Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033028 [exp] 165 / 4e-51 ND / Lus10025539 [exp] 160 / 1e-50 ND 35 / 0.009 Lus10021744 [exp] 135 / 7e-41 ND / Lus10010609 [exp] 135 / 2e-39 ND / Lus10012674 [exp] 83 / 8e-21 ND / Lus10039431 [exp] 82 / 1e-19 ND / Lus10003221 [exp] 72 / 3e-16 ND / Lus10030123 [exp] 67 / 8e-14 ND / Lus10012492 [exp] 66 / 2e-13 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [flax] [poplar] WRKY-GCM1 PF03108 [flax] [poplar] DBD_Tnp_Mut MuDR family transposase
Representative CDS sequence Show only first row Show all	>Lus10032535 pacid=23146384 polypeptide=Lus10032535 locus=Lus10032535.g ID=Lus10032535.BGIv1.0 annot-version=v1.0 ATGACAAACTCAGCCACTTACAACGCGCGGTGCATCCTACGAAGCGCGGCGCATTGTAGGTGGCCTATAACGGCACCCGAGCTGTACACAACGTTGGGCG ATAACATCAACAAGATGATGACTGCTGACCACTATGAGGGTTGCCCTGAGATCCCGGATTTTGACCCCACCCGTCAACATTTCTACATCGACCGACGGTT TTACACGAAGAAGGAGGCAAGTTTTGCCGTAAAACACTGGGCATTGCATAACAATCGAGCCCTGGCGACGTCTCACTCAAAGACTTGGGAGTTGGAGGTC ATGTGTTATTCTCACAAAACTAACAACTGTCCATGGAGGTTACGCGTCACCGGCAGCGCAGGTGATGGGTTCTGGGCGGGTCAGCAGTGGAATCCACAAC ACACATGTGACGGAAGCGAGCACAAAGTAGAATCTATCGAACTAGATGTGAATGTCATCGTGGATGCGGTGATGCACCTTGTCCGGTCAAGGCCACACTT TCTGATCCGTTTGATCCAAGATGAGATTCCACACCTTTTCCAACGTCAGATCTCGTAG
AA sequence Show only first row Show all	>Lus10032535 pacid=23146384 polypeptide=Lus10032535 locus=Lus10032535.g ID=Lus10032535.BGIv1.0 annot-version=v1.0 MTNSATYNARCILRSAAHCRWPITAPELYTTLGDNINKMMTADHYEGCPEIPDFDPTRQHFYIDRRFYTKKEASFAVKHWALHNNRALATSHSKTWELEV MCYSHKTNNCPWRLRVTGSAGDGFWAGQQWNPQHTCDGSEHKVESIELDVNVIVDAVMHLVRSRPHFLIRLIQDEIPHLFQRQIS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10032535 [exp]	0	1
AT2G27930			PLATZ transcription factor fam...		Lus10036044 [exp]	4.1	0.8736
					Lus10000400 [exp]	6.5	0.8728
AT2G29110		ATGLR2.8	glutamate receptor 2.8 (.1)		Lus10026877 [exp]	7.9	0.8728
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10029390 [exp]	9.2	0.8728
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10029913 [exp]	10.2	0.8728
AT1G31280		AGO2	argonaute 2, Argonaute family ...		Lus10018290 [exp]	10.6	0.7240
AT5G18460			Protein of Unknown Function (D...		Lus10006860 [exp]	11.2	0.8728
					Lus10009372 [exp]	12.1	0.8728
AT4G29280		LCR22	low-molecular-weight cysteine-...		Lus10015983 [exp]	13.0	0.8728
AT3G45600		TET3	tetraspanin3 (.1)		Lus10023218 [exp]	14.7	0.8654

Compare expression of checked genes

Lus10032535 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.