Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50970 574 / 0 transducin family protein / WD-40 repeat family protein (.1) AT5G19920 395 / 2e-130 Transducin/WD40 repeat-like superfamily protein (.1) AT5G16750 48 / 2e-05 TOZ TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) AT5G58230 45 / 0.0001 MSI1, MEE70, ATMSI1 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) AT2G19520 44 / 0.0002 ATMSI4, ACG1, NFC4, NFC04, FVE MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1) AT2G43770 44 / 0.0003 Transducin/WD40 repeat-like superfamily protein (.1) AT4G29730 42 / 0.0007 MSI5, NFC5 nucleosome/chromatin assembly factor group C5 (.1) AT5G13480 42 / 0.0008 FY Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043205 [exp] 1028 / 0 AT5G50970 603 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10020916 [exp] 48 / 1e-05 AT5G58230 782 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10033460 [exp] 48 / 1e-05 AT5G58230 781 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10020917 [exp] 46 / 6e-05 AT5G58230 696 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10033459 [exp] 45 / 0.0001 AT5G58230 723 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G108100 [exp] 680 / 0 AT5G50970 598 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.015G106300 [exp] 660 / 0 AT5G50970 566 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.002G216200 [exp] 50 / 2e-06 AT5G58230 784 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G179700 [exp] 50 / 3e-06 AT5G58230 790 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G045500 [exp] 43 / 0.0007 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10032536 pacid=23146258 polypeptide=Lus10032536 locus=Lus10032536.g ID=Lus10032536.BGIv1.0 annot-version=v1.0 ATGAGCCCGATTACACCTATTCTGAAGAAGCCGAAACTTGAGCAAGGTCACGACGACGACGGCGAATCAGTACGGCGGCGGAATAACAAGTCTCCGGTTA AAGAGCAAAACGGAGGAGGCGGAGCAGAATTTGATGATAATGAAGAAACCACGGACGACGAGGAAGAGTCCGCGTTGGTGGCGCTAATCGAACATCGTAC TCGTGAAGTTGAACATCTGAAGAAGCGTATCAATTACTACACCTCTCAGCTTGAGGATGCAGAAAGGAAATTGCAAACGTCAAAATCACAATTGGCTCGT CTCAAGAGAGGTACCATGCCACAGAATACTTCTCTTGAGTATGACACTAAAAGATTGAAGATGGGGAACAGCTTAACTAGTTCCGTTCGTGTTAATGAAA GTTCTCCAGGGAATCAAACTCAGACTAGGACTGAACTTGTTATCCCTGCTGTGACTCCAAAGACTCTACAATCAGGAGGCTCTGGCGCAACGATATCCGT TCATTCCAGTGCTCAGACGAGTTCTTCACACCGCACTGATACTGTTTCGAAAGTAAAAGCGGAAAAGTCGGATAGAAGTCGTACGGTTGAGAACCAGGAT AAAGGAATAAAGAGGAGACGTGAACAGAAAGAACACACGGAATTGATTCCAATGGTATGCAGAAACTCTTCCCCACAAACAATTTATTGCCATGCTAATA ATCACATTTCTAGTCAGCACAAGAGAAAGTTGAGAAGTCTTGTACTTTGTCCAGTGAATGATCAACTTTTCGTTACCAGCGCTTTGGATGGTCTGGTCAA TTTGTGGCAACTGCAGGCTTCGTCGTCAAGTGCCTCTCTTCTTAACACAACTGAGTGCATTTCTCCGAAAACCAGACGGTGGCCTGAAGATATAGCATGG CACCCATCGGGAAACAGCTTGGTTGCCACTTACACTGCTGATAGTGGCGACTCTCAGATAGCAATTATTGATCTGAATAGCAAACATGACAAAAGCCGAG TAACTTTTCTACAAGAAAAGCCTCACGTTAAGGGTATCGTAAATGGCGTAATGTTTATGCCGTGGGGAGATCCCTTTTTCGTCACCAGTGGCAGTGATCA CGCCGTTGTTGCTTGGAATGAGGACTCTGAAAAGTCATGGAAGCCAAAGGCTTTGCACAGGAACCTTCATTCTTCTGCTGTTATGGGGGCAGCCGGGATG CATCATAAGCAGATTGTACTTTCTGCTGGTGCAGACAAGAGAATCATCGGTTTCGATGTCCAAGCAGGGAGAGTAGAACTTAAGCATCAAGTGGACAGCA AATGCATGAGTGTGTTGCCTAATCCGGCCGACTTCAATCTCTATATGGTTCAAACAGGGACCCCAGAGAAGCAGCTCAGACTATTCGATATCCGACTAAG GCAGACCGAGATCCACACATTCGGGTTTAAACAACAAAGCAGCGACTCACAATCGGCTCTGATTAATCAAGGTTGGTCTCACGACGGATTGTACCTCTCG TCCGGGTCGGTTGATCCTGTAATCCACATATTCGACATCAGGTATAACGGTCACAAGCCATCGCAATCAATAAGAGCTCATCAGAAACGAGTCTTCAAAG CCGAGTGGCATTGCTCTCAGCGTCTACTGATCTCCATCTCTTCTGATCTCCACATTGGCTTGCACAAGATATAG
AA sequence Show only first row Show all	>Lus10032536 pacid=23146258 polypeptide=Lus10032536 locus=Lus10032536.g ID=Lus10032536.BGIv1.0 annot-version=v1.0 MSPITPILKKPKLEQGHDDDGESVRRRNNKSPVKEQNGGGGAEFDDNEETTDDEEESALVALIEHRTREVEHLKKRINYYTSQLEDAERKLQTSKSQLAR LKRGTMPQNTSLEYDTKRLKMGNSLTSSVRVNESSPGNQTQTRTELVIPAVTPKTLQSGGSGATISVHSSAQTSSSHRTDTVSKVKAEKSDRSRTVENQD KGIKRRREQKEHTELIPMVCRNSSPQTIYCHANNHISSQHKRKLRSLVLCPVNDQLFVTSALDGLVNLWQLQASSSSASLLNTTECISPKTRRWPEDIAW HPSGNSLVATYTADSGDSQIAIIDLNSKHDKSRVTFLQEKPHVKGIVNGVMFMPWGDPFFVTSGSDHAVVAWNEDSEKSWKPKALHRNLHSSAVMGAAGM HHKQIVLSAGADKRIIGFDVQAGRVELKHQVDSKCMSVLPNPADFNLYMVQTGTPEKQLRLFDIRLRQTEIHTFGFKQQSSDSQSALINQGWSHDGLYLS SGSVDPVIHIFDIRYNGHKPSQSIRAHQKRVFKAEWHCSQRLLISISSDLHIGLHKI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50970			transducin family protein / WD...		Lus10032536 [exp]	0	1
AT4G12750			Homeodomain-like transcription...		Lus10016078 [exp]	8.1	0.8149
AT1G04910			O-fucosyltransferase family pr...		Lus10017105 [exp]	12.5	0.7957
AT4G04885		PCFS4	PCF11P-similar protein 4 (.1)		Lus10006766 [exp]	17.7	0.7875
AT2G39805			Integral membrane Yip1 family ...		Lus10030159 [exp]	20.1	0.7389
AT5G52290		SHOC1	shortage in chiasmata 1 (.1)		Lus10014981 [exp]	20.7	0.6835
AT4G12750			Homeodomain-like transcription...		Lus10012302 [exp]	23.7	0.8023
AT2G22010		RKP	related to KPC1 (.1.2)		Lus10016817 [exp]	24.3	0.7962
AT3G06440			Galactosyltransferase family p...		Lus10032650 [exp]	26.8	0.7618
AT5G55390		EDM2	ENHANCED DOWNY MILDEW 2 (.1.2)		Lus10023353 [exp]	27.1	0.7762
AT4G18490			unknown protein		Lus10034597 [exp]	35.7	0.7533

Compare expression of checked genes

Lus10032536 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.