Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61960 650 / 0 AML1 MEI2-like protein 1 (.1.2) AT5G07290 614 / 0 AML4 MEI2-like 4 (.1) AT1G29400 305 / 2e-90 AML5 MEI2-like protein 5 (.1.2) AT2G42890 275 / 5e-79 AML2, MEI2 MEI2-like 2 (.1.2.3) AT4G18120 224 / 9e-62 AML3 MEI2-like 3 (.1.2) AT3G26120 94 / 2e-19 TEL1 terminal EAR1-like 1 (.1) AT1G67770 86 / 4e-17 TEL2 terminal EAR1-like 2 (.1) AT5G54900 62 / 1e-09 ATRBP45A RNA-binding protein 45A (.1) AT4G00830 54 / 5e-07 LIF2 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT4G24770 52 / 1e-06 CP31, ATRBP33, ATRBP31, RBP31 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043204 [exp] 1671 / 0 AT5G61960 728 / 0.0 MEI2-like protein 1 (.1.2) Lus10020769 [exp] 467 / 5e-151 AT1G29400 786 / 0.0 MEI2-like protein 5 (.1.2) Lus10007346 [exp] 444 / 8e-142 AT1G29400 779 / 0.0 MEI2-like protein 5 (.1.2) Lus10004591 [exp] 199 / 1e-52 AT1G29400 908 / 0.0 MEI2-like protein 5 (.1.2) Lus10011968 [exp] 195 / 2e-51 AT1G29400 900 / 0.0 MEI2-like protein 5 (.1.2) Lus10036953 [exp] 97 / 2e-20 AT3G26120 429 / 7e-143 terminal EAR1-like 1 (.1) Lus10006234 [exp] 96 / 4e-20 AT3G26120 431 / 2e-144 terminal EAR1-like 1 (.1) Lus10002047 [exp] 85 / 4e-18 AT3G26120 167 / 1e-48 terminal EAR1-like 1 (.1) Lus10002046 [exp] 75 / 1e-13 AT3G26120 298 / 4e-94 terminal EAR1-like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G106000 [exp] 978 / 0 AT5G61960 767 / 0.0 MEI2-like protein 1 (.1.2) Potri.012G107100 [exp] 902 / 0 AT5G07290 750 / 0.0 MEI2-like 4 (.1) Potri.003G162700 [exp] 732 / 0 AT5G07290 645 / 0.0 MEI2-like 4 (.1) Potri.001G067300 [exp] 694 / 0 AT5G61960 627 / 0.0 MEI2-like protein 1 (.1.2) Potri.012G107900 [exp] 365 / 8e-116 AT1G29400 288 / 2e-88 MEI2-like protein 5 (.1.2) Potri.005G202000 [exp] 289 / 8e-84 AT1G29400 778 / 0.0 MEI2-like protein 5 (.1.2) Potri.002G059800 [exp] 286 / 5e-83 AT1G29400 781 / 0.0 MEI2-like protein 5 (.1.2) Potri.010G051100 [exp] 103 / 1e-22 AT3G26120 259 / 3e-77 terminal EAR1-like 1 (.1) Potri.008G183000 [exp] 100 / 2e-21 AT3G26120 455 / 1e-152 terminal EAR1-like 1 (.1) Potri.013G084400 [exp] 67 / 2e-11 AT3G26120 150 / 2e-40 terminal EAR1-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF04059 [flax] [poplar] RRM_2 RNA recognition motif 2 CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10032537 pacid=23146326 polypeptide=Lus10032537 locus=Lus10032537.g ID=Lus10032537.BGIv1.0 annot-version=v1.0 ATGCCGTTTGAGATCATGGATCAAAGGGGTGTTACTGCTTCTTCCCATTTCTTTGAGGACATTTGTCTTCCTGCCGAGAGACAAGTTGGGTTTAGGAAAC CATATGCAATGACGGATCACCACCAAGGTGGACATCAAACCATGCCGATACCTGGAAACAAATTTGTTGCTTCGTCACCCTTTGATTCCCTTTCGCCAGC TAGTGCTCTGTCAATGGAACTGCCTCGGTCAATCGTCACTAGACCTAGTAATGGAAAATTAAGCAATGGGGAAGGGACATCTAACGCTGGATGGAATTCT GTCGATCACCATCCAAAGTCGTGGTCTAGTTTGTCATCACACCCTGCAGCAGCTCATAGTTTGCGCCAAAATGGAGCTAATATTACTGGGACTGAGTGGG AGAGCAGTTTGTTCTCAAGCTCATTTTCTGAAATATTCAATAGGAAAATGAGGTTAATGGGTAATGACATTCAATCTCGAGAACCGACAAAAGTTGCTGT TTCTGCTCTTGAGGAAGAGCCCTTTGAGTCTCTTGAAGAAATTGAGGCACAGACTATTGGGAATCTTCTCCCTGCTGACGATGATCTATTTTCTGGCATC ACTAATGACTTGGGGAGTATTGTCAACGGCACTGTTGGAGATGATTTAGAAGATTTTGATCTTTTTAGCAGTGGGGGAGGAATGGAATTAGAAGGGGATA TCATTGCTGGGCGAAAAAATGCTGATCTGTTTGCACTTTCTAGTGGTTCCATCACTAGTAAACACCCCTTTGGAGAACTGCCTTCCAGAACACTTTTCGT TAGAAACATCAACAGTAATGTGGAAGATTCCGAATTGAAAACACTCTTTGAGCAATATGGGGAGATACGAACCTTGTACACAACTTGCAAGCATCGCGGA TTTGTAATGATCTCGTATTATGATATACGAGCTGCTCAAAATGCGATGCAATCACTTCAACATAAGCCTCTGAGACGTAGAAAACTTGACATACACTTTT CAATTCCAAAGGAGAATCCATCAGACAAAGATGTCAACCAAGGAATCCTAACAGTTCTCAACCTTGATTCCTCTGTTTCAACAGATGAGCTTCAGCAGAT ATTTGCTGTTTATGGAGAAATCAAAGAGGTCCATGGCAACCAAAATAAGCATAATCATGTACTCATAGAGTACTATGATGTGAGATCTGTAGAAGCTGCC CTCAACGCCTTAGATAGAACTGAGATTGCTGGGAAGCAGATTAAACTTGAAGCAGGCACAATGGGTGCTGCAAGACGGTCAGTGCAGGGGCAAGATGAAA CCAGTCTTGGAAGTCAAATTGACGACTTGTCTTCTATGCAAATGGCAGCATATTCTGGAGTGATGACATCCAGTTGCATGGATGGCATACCATCCCAGGT TGCGCATTCCCCCATAGGTGCATTTATTGATCCTCATCGGAGTTCTAGTGTTCCGAATCATCTACGGTCTCGAGAAGCATCAGTTGCCAAGCAATTCAGC CACCCTGATCACCAACGTTCCATTCAGGAAATTAGTTTTAGTAATCATAGCATGTCCACTTTCCATCCTCATTCGCTTCCAGAGTACCATGATGGTCTGA CAAATGGAATTCCCTACAACTCTGCAAGCACCCTAGGAGGCATGGCTGGTAGTGTTGGTTCGCAAGTAATGGAGGGAATTAATGGTAGGCATGGTCGTGG AGTATCCTCTAATGTGCACATGATGGAACTTAATAGTCGTGGTTCTTTTGGTTTCGGTTCTCCTGGAAACGGAAGCGTCCCTGGTCATTATTCATGGAAC AATTCCACCTCTGCTCATCCAAAGCCGGCTAATCTCATGATGTGGCCTAATTCTGGATCCTTTGTCAACGGTATTCGTGCTCATCCTCTTTCTCATCTCA ATGGACTTCCGAGGGCACCTACCGGGATGCTGAGCCGAGGACCTGCACCCCACCATGTTGGCTCTGCGCCAGCTGTCAACCAGTCCCTGTGGGACTCTCC AGACCCTTCCAGCTTCCATTTGGGTTCGCTCGGAAGCATGGGGGGATTTGCTAGTAGCTCTCCACCACATCCTATGGAGAACATTTTCCCGCACGTTAAT AACAATTGTGTTGACATAACAAAAAGCGCCGCTGGGATACGCTCACCTCAGCAAATGTGCCACCTTTTCCCTGGAAGAAACCAAATGGTTTCAATGCCTT CATCTTTTGATTCTCCGAATGACCGCGTCAGGAATTTGTCACATCGCAGAATGGAATCCAACTCCAATCAGTCAGATAAGAAGCAGTTTGAACTTGATAT TGAGCGCATCGCACGTGGCGAAGATAGCCGGACCACATTGATGATAAAGAACATTCCAAACAAGCTTCCTTTTGACCAATCAATTTTAAATCTCTTGACA GGTACACTTCAAAGATGCTTCTTGCTGCAATTGATGAGTACTGCCGCGGATCTTATGATTTTCTCTATCTGCCAATCGACTTCAAGGCAAAATAAATGCA ATGTGGGTTATGCATTCATCAACATGACTGATCCGCAACAGATCATTCCATTCCATAAGGCGTTCAATGGGAAAAAGTGGGAGAAGTTCAACAGTGAAAA GGTGGCATCTTTGGCATATGCTCGGATTCAAGGAAAGGCTGCTCTTATTTCCCATTTCCAGAATTCGAGCTTGATGAATGAGGATAAACGTTGTCGGCCT ATACTGTTCCACACAGAAGGTCCAAATGCTGGTGATCCGGAGCCTTTCCCCATGGGTACGAACATTAGGTCGAGAATGGGGAGGCCACGAACCAGCGGCC ACGAAGGGAACCACCACCACCGTCAAGGGAGCCCATCATCGGCCGCAAACATGGATGGAACGGACACATCCTCTAATTCTGACTGA
AA sequence Show only first row Show all	>Lus10032537 pacid=23146326 polypeptide=Lus10032537 locus=Lus10032537.g ID=Lus10032537.BGIv1.0 annot-version=v1.0 MPFEIMDQRGVTASSHFFEDICLPAERQVGFRKPYAMTDHHQGGHQTMPIPGNKFVASSPFDSLSPASALSMELPRSIVTRPSNGKLSNGEGTSNAGWNS VDHHPKSWSSLSSHPAAAHSLRQNGANITGTEWESSLFSSSFSEIFNRKMRLMGNDIQSREPTKVAVSALEEEPFESLEEIEAQTIGNLLPADDDLFSGI TNDLGSIVNGTVGDDLEDFDLFSSGGGMELEGDIIAGRKNADLFALSSGSITSKHPFGELPSRTLFVRNINSNVEDSELKTLFEQYGEIRTLYTTCKHRG FVMISYYDIRAAQNAMQSLQHKPLRRRKLDIHFSIPKENPSDKDVNQGILTVLNLDSSVSTDELQQIFAVYGEIKEVHGNQNKHNHVLIEYYDVRSVEAA LNALDRTEIAGKQIKLEAGTMGAARRSVQGQDETSLGSQIDDLSSMQMAAYSGVMTSSCMDGIPSQVAHSPIGAFIDPHRSSSVPNHLRSREASVAKQFS HPDHQRSIQEISFSNHSMSTFHPHSLPEYHDGLTNGIPYNSASTLGGMAGSVGSQVMEGINGRHGRGVSSNVHMMELNSRGSFGFGSPGNGSVPGHYSWN NSTSAHPKPANLMMWPNSGSFVNGIRAHPLSHLNGLPRAPTGMLSRGPAPHHVGSAPAVNQSLWDSPDPSSFHLGSLGSMGGFASSSPPHPMENIFPHVN NNCVDITKSAAGIRSPQQMCHLFPGRNQMVSMPSSFDSPNDRVRNLSHRRMESNSNQSDKKQFELDIERIARGEDSRTTLMIKNIPNKLPFDQSILNLLT GTLQRCFLLQLMSTAADLMIFSICQSTSRQNKCNVGYAFINMTDPQQIIPFHKAFNGKKWEKFNSEKVASLAYARIQGKAALISHFQNSSLMNEDKRCRP ILFHTEGPNAGDPEPFPMGTNIRSRMGRPRTSGHEGNHHHRQGSPSSAANMDGTDTSSNSD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61960		AML1	MEI2-like protein 1 (.1.2)		Lus10032537 [exp]	0	1
AT1G27750			nucleic acid binding (.1)		Lus10018694 [exp]	2.4	0.9202
AT2G27810		ATNAT12	ARABIDOPSIS NUCLEOBASE-ASCORBA...		Lus10009402 [exp]	3.5	0.9193
AT5G11530		EMF1	embryonic flower 1 (EMF1) (.1)		Lus10009490 [exp]	3.5	0.9279
AT3G54440			glycoside hydrolase family 2 p...		Lus10039520 [exp]	4.0	0.9255
AT2G01210			Leucine-rich repeat protein ki...		Lus10043480 [exp]	4.9	0.8939
AT1G16560			Per1-like family protein (.1.2...		Lus10038885 [exp]	6.2	0.8933
AT2G36720			Acyl-CoA N-acyltransferase wit...		Lus10027738 [exp]	7.0	0.9013
AT3G42860			zinc knuckle (CCHC-type) famil...		Lus10012985 [exp]	7.3	0.9043
AT3G22430			unknown protein		Lus10041205 [exp]	8.3	0.8817
AT1G04210			Leucine-rich repeat protein ki...		Lus10021899 [exp]	8.7	0.9172

Compare expression of checked genes

Lus10032537 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.