Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61970 486 / 1e-169 signal recognition particle-related / SRP-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043202 [exp] 695 / 0 AT5G61970 468 / 6e-160 signal recognition particle-related / SRP-related (.1) Lus10040614 [exp] 367 / 5e-126 AT5G61970 345 / 3e-114 signal recognition particle-related / SRP-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G105600 [exp] 538 / 0 AT5G61970 915 / 0.0 signal recognition particle-related / SRP-related (.1) Potri.012G106200 [exp] 531 / 0 AT5G61970 904 / 0.0 signal recognition particle-related / SRP-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032538 pacid=23146395 polypeptide=Lus10032538 locus=Lus10032538.g ID=Lus10032538.BGIv1.0 annot-version=v1.0 ATGGAAGGCCCTGCTCTAGACCTCTTCAAGTCAAAGCTAGAGGTTGGAGCTGTTATTTCTGAGGCAAGGACTCAACAGGCTGCATCCTTGACAGAGTTTC AGTGGCTCGGGCACAAATTTCCTATCTCTAATGCGAAAACTCGAGTTTCCATACTGAAAGCTCAAGAGCTGGAGAAAGATCTGGATGGTAGAGCTAATGA TTCGCTTCCAGCAGACAAAAAGCTAGCAGTATTTGACAAAATATTTACCGCATACCATGAAGCTCGGGGCTATATTAGGAGCGACTTGACTGGTGCCGGC AATGCTGATCGCGTGAAGGATGACTTGAGCGGTCTGCACGATGCTGTCACAGCTGTATTAGGACTAAGAACGATAGAGCGTAACCGTCTGTTGGTTAGCA TTGCTAAAAGTAAGCTTGTCAAACGCCGGGATGAAAAGAATGAGAAGGCTACCAAGCCGGAAGAACTTGTTCGCCTGTATGACCTGTTGCTACAGAATGC GGATGATCTTTCTGAATTGGTCAGCTCAAGGAAAGAGAGAACATCAGAAGAAGTTGCATTTGCTGAAGAGTGTGGACGTAGGCGTTTAGCTTTCCGCGCC GAAAGGTGTTTCTATTTGGCAAAGTCGTACAGCATAGCTGGCAAGAGAGTAGAAGCTTATGTTCTCTACTGTCATGCCCAATCCCTTGCAGAGAATGCCT TGAAGAGTAATCAAGCTTCCAGTGACAAAGATGAGATTACGATCAAGGAGCTGAAGGCTTTATCCAGTGAGTGCAGATCTAGTAGTTGCATAGAACACGC ACTAGGGATTATGGACGAAGAGAAGGCTCCTGAAAATCTCTCAACGAGAATCTCTAATTTATCTTTGAATGGGGCTAACAACAACACGAAATTCCTTCTT CAGAATCTCGATGTATATGAAGCTGCTCTCGGTGATCCAACTGTTAAACCAACTCAACCTCCACGCATTGAAGCTTTTCCTCCATCCTTCCAGTCAATTC CTAGAAATCCTATCATTCGAGATCTCGCGTACGAGTATATTGATTTCCCATCGCTGGAGAATAGGATGAAGAAGCGAGGCCTCATTAGTAGGTTGTGGGG AAGATAA
AA sequence Show only first row Show all	>Lus10032538 pacid=23146395 polypeptide=Lus10032538 locus=Lus10032538.g ID=Lus10032538.BGIv1.0 annot-version=v1.0 MEGPALDLFKSKLEVGAVISEARTQQAASLTEFQWLGHKFPISNAKTRVSILKAQELEKDLDGRANDSLPADKKLAVFDKIFTAYHEARGYIRSDLTGAG NADRVKDDLSGLHDAVTAVLGLRTIERNRLLVSIAKSKLVKRRDEKNEKATKPEELVRLYDLLLQNADDLSELVSSRKERTSEEVAFAEECGRRRLAFRA ERCFYLAKSYSIAGKRVEAYVLYCHAQSLAENALKSNQASSDKDEITIKELKALSSECRSSSCIEHALGIMDEEKAPENLSTRISNLSLNGANNNTKFLL QNLDVYEAALGDPTVKPTQPPRIEAFPPSFQSIPRNPIIRDLAYEYIDFPSLENRMKKRGLISRLWGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61970			signal recognition particle-re...		Lus10032538 [exp]	0	1
AT1G79915			Putative methyltransferase fam...		Lus10035886 [exp]	1.4	0.9238
AT5G49510		PFD3, PDF3	prefoldin 3 (.1.2)		Lus10017066 [exp]	3.0	0.9424
AT4G38170		FRS9	FAR1-related sequence 9 (.1)		Lus10013855 [exp]	7.2	0.8889
AT1G54650			Methyltransferase family prote...		Lus10006576 [exp]	9.0	0.9188
AT3G50120			Plant protein of unknown funct...		Lus10010064 [exp]	11.2	0.9159
AT3G11470			4'-phosphopantetheinyl transfe...		Lus10017021 [exp]	12.0	0.9058
AT4G04720		CPK21	calcium-dependent protein kina...		Lus10002075 [exp]	13.3	0.9179
AT4G26210			Mitochondrial ATP synthase sub...		Lus10007995 [exp]	13.4	0.8959
AT5G27400			S-adenosyl-L-methionine-depend...		Lus10015166 [exp]	13.4	0.9084
AT1G66540			Cytochrome P450 superfamily pr...		Lus10032856 [exp]	14.0	0.9069

Compare expression of checked genes

Lus10032538 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.