Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18750 87 / 4e-20 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G18730 85 / 2e-19 unknown protein AT5G18740 84 / 2e-19 Domain of unknown function (DUF3444) (.1) AT5G27240 77 / 2e-16 DNAJ heat shock N-terminal domain-containing protein (.1) AT3G04980 72 / 7e-15 DNAJ heat shock N-terminal domain-containing protein (.1) AT2G05230 67 / 2e-13 DNAJ heat shock N-terminal domain-containing protein (.1) AT2G05250 67 / 2e-13 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G35753 66 / 5e-13 Domain of unknown function (DUF3444) (.1) AT5G18710 64 / 1e-12 Domain of unknown function (DUF3444) (.1) AT5G53150 63 / 1e-11 DNAJ heat shock N-terminal domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043201 [exp] 335 / 8e-117 AT5G27240 102 / 8e-24 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10018975 [exp] 88 / 3e-20 AT5G27240 225 / 3e-61 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10033983 [exp] 85 / 2e-19 AT5G27240 557 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10037161 [exp] 77 / 1e-16 AT5G27240 335 / 6e-100 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10036769 [exp] 76 / 2e-16 AT5G27240 320 / 2e-92 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10012795 [exp] 69 / 9e-14 AT5G18750 311 / 2e-94 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10012334 [exp] 66 / 7e-13 AT5G35753 414 / 3e-134 Domain of unknown function (DUF3444) (.1) Lus10006380 [exp] 65 / 2e-12 AT5G35753 420 / 2e-136 Domain of unknown function (DUF3444) (.1) Lus10027316 [exp] 64 / 6e-12 AT2G35540 383 / 1e-126 DNAJ heat shock N-terminal domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G018800 [exp] 82 / 3e-18 AT5G18750 446 / 3e-142 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.013G029500 [exp] 79 / 3e-17 AT3G04980 524 / 6e-167 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.005G043200 [exp] 79 / 4e-17 AT5G27240 416 / 4e-127 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.003G171200 [exp] 72 / 4e-15 AT5G53150 311 / 6e-95 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.001G057200 [exp] 70 / 4e-14 AT5G53150 318 / 1e-97 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.014G165600 [exp] 69 / 5e-14 AT2G05230 730 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.003G097800 [exp] 66 / 7e-13 AT2G35540 235 / 4e-69 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.012G001100 [exp] 66 / 1e-12 AT5G53150 570 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.002G221000 [exp] 64 / 2e-12 AT2G05230 696 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.015G097500 [exp] 64 / 5e-12 AT5G53150 487 / 4e-162 DNAJ heat shock N-terminal domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11926 [flax] [poplar] DUF3444 Domain of unknown function (DUF3444)
Representative CDS sequence Show only first row Show all	>Lus10032539 pacid=23146392 polypeptide=Lus10032539 locus=Lus10032539.g ID=Lus10032539.BGIv1.0 annot-version=v1.0 ATGGTATCAGAGGTGCAAGCAGCGGTGACATACTTGGAACCTGCAGGTGTTCTTGATCACGAGGTGAAAGCGGCCAGGGAGAGGCTCCCGATTTCTTGCG GGCTGTTCAGGATCAGCGAGAGGAGCTGCAGCATTGATCTTTCGCGGTTCTCATTTCGTGTCAGGTACCAGCAGACAAGCGGGTTGTGCTACAAGATATA CCCACGGAAGGGGGAGATGTGGGCAATGTACAGAGGGTGGAATACGAAATGGGGAGTATCGGATTACAGAAACTGCAAGTACATCGTCGTCCAAGTGGAT TCCGGCATTACAGAAAGGAATGATGGCGGCATCCTTGTGACTAGGATGGAGACAGTGGAAGGTTGCTTCACATTTGGATGTCGTTGTAAGGATGGGAGTG ATGCAAGTCGTGTTATTCCAAGAGGTAATCTGCTTTGCTTTTCTCATCGAATAACGGCGTTCAAGGTTCCTGGGATTCAGCAGTTTGGGGTATCAGTGGA GGAGTCTTGGCACCTGGAACCAAATGCACTGCCGTAG
AA sequence Show only first row Show all	>Lus10032539 pacid=23146392 polypeptide=Lus10032539 locus=Lus10032539.g ID=Lus10032539.BGIv1.0 annot-version=v1.0 MVSEVQAAVTYLEPAGVLDHEVKAARERLPISCGLFRISERSCSIDLSRFSFRVRYQQTSGLCYKIYPRKGEMWAMYRGWNTKWGVSDYRNCKYIVVQVD SGITERNDGGILVTRMETVEGCFTFGCRCKDGSDASRVIPRGNLLCFSHRITAFKVPGIQQFGVSVEESWHLEPNALP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18750			DNAJ heat shock N-terminal dom...		Lus10032539 [exp]	0	1
AT5G24060			Pentatricopeptide repeat (PPR)...		Lus10027532 [exp]	2.8	0.9000
AT1G64355			unknown protein		Lus10032371 [exp]	4.2	0.8752
AT2G17695			unknown protein		Lus10028386 [exp]	4.5	0.8875
AT3G55850		LAF3 ISF2, LAF3...	LAF3 ISOFORM 2, LONG AFTER FAR...		Lus10016328 [exp]	5.2	0.8684
AT3G25470			bacterial hemolysin-related (....		Lus10002144 [exp]	7.9	0.8893
AT1G79915			Putative methyltransferase fam...		Lus10025778 [exp]	8.3	0.8482
AT1G60600		ABC4	ABERRANT CHLOROPLAST DEVELOPME...		Lus10032658 [exp]	8.9	0.8906
AT3G07525		ATG10, ATATG10	autophagy 10, autophagocytosis...		Lus10002145 [exp]	9.2	0.8499
AT4G26740		CLO1, ATPXG1, A...	CALEOSIN1, ARABIDOPSIS THALIAN...		Lus10011775 [exp]	13.2	0.8464
AT5G65820			Pentatricopeptide repeat (PPR)...		Lus10011566 [exp]	13.3	0.8564

Compare expression of checked genes

Lus10032539 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.