Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25560 70 / 5e-14 DNAJ heat shock N-terminal domain-containing protein (.1) AT2G05230 63 / 8e-12 DNAJ heat shock N-terminal domain-containing protein (.1) AT2G05250 63 / 8e-12 DNAJ heat shock N-terminal domain-containing protein (.1) AT4G19570 61 / 6e-11 Chaperone DnaJ-domain superfamily protein (.1) AT5G53150 57 / 2e-09 DNAJ heat shock N-terminal domain-containing protein (.1) AT3G06778 56 / 2e-09 Chaperone DnaJ-domain superfamily protein (.1) AT4G19580 54 / 1e-08 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G49060 50 / 2e-07 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1) AT5G37750 49 / 3e-07 Chaperone DnaJ-domain superfamily protein (.1) AT5G37440 49 / 3e-07 Chaperone DnaJ-domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043201 [exp] 337 / 3e-117 AT5G27240 102 / 8e-24 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10001171 [exp] 66 / 1e-12 AT2G05250 308 / 2e-98 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10008983 [exp] 66 / 1e-12 AT5G53150 509 / 3e-172 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10001744 [exp] 65 / 2e-12 AT2G05250 322 / 5e-103 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10038816 [exp] 63 / 9e-12 AT5G53150 540 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10014927 [exp] 63 / 1e-11 AT5G53150 535 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10028842 [exp] 61 / 4e-11 AT5G53150 498 / 3e-167 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10006380 [exp] 59 / 3e-10 AT5G35753 420 / 2e-136 Domain of unknown function (DUF3444) (.1) Lus10012334 [exp] 58 / 5e-10 AT5G35753 414 / 3e-134 Domain of unknown function (DUF3444) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G221000 [exp] 73 / 3e-15 AT2G05230 696 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.003G171200 [exp] 71 / 1e-14 AT5G53150 311 / 6e-95 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.001G057200 [exp] 71 / 2e-14 AT5G53150 318 / 1e-97 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.015G097500 [exp] 71 / 3e-14 AT5G53150 487 / 4e-162 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.015G020200 [exp] 70 / 3e-14 AT5G53150 574 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.014G165600 [exp] 70 / 4e-14 AT2G05230 730 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.012G001100 [exp] 69 / 1e-13 AT5G53150 570 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.013G029500 [exp] 68 / 2e-13 AT3G04980 524 / 6e-167 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.016G120000 [exp] 49 / 5e-07 AT3G08970 479 / 6e-164 THERMOSENSITIVE MALE STERILE 1, DNAJ heat shock N-terminal domain-containing protein (.1) Potri.010G005700 [exp] 47 / 2e-06 AT3G06778 153 / 1e-45 Chaperone DnaJ-domain superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10032540 pacid=23146328 polypeptide=Lus10032540 locus=Lus10032540.g ID=Lus10032540.BGIv1.0 annot-version=v1.0 ATGATGAATCAGAACAAGGTAGATGCATTGAGAGAGAAAAGGACAGCAGAACAGATGATTATGAGAGGAGAAGACTTCAGCAAGGCTATGGAGCATTTAC TTAGGGCTCGCGATCTGTTTCCTCCGAGACTTGACGACGTCGAATCTCTAACAGCAGCTTGCGAAATCTTGTCCGCGGCCAACGGTGAGATTAACATTCC GGGAAGTGGTGTAGTGGATCACTACTTAATTCTCGGAGTCGACCCCTCTGCTAGCTTCTCCGACGTCCGATCTCGATTTCACAAGCTCACCAACTTGCTG CAACCCCTCAAGAATAAGCAAGCATACGCGGGTTTCGGCCGAAGAGCCTTCACACTGTTGGATAATGCTCTATTGGTGCTCACGGACGGGGAGAAGCGCA CAGAATTCGACGGGAGAAGAAATCAGTGCTTCAAGGATTGTGAAATCGATGCTGCTTCGTTGATGCCTAATTGGAGTAGTTGGAGTTTCAAGGATCTTGT TGCTGGTCAAATATGGGCTGTGTATGGGATGGAATCTCACTATTCTCTGCCGAGACAATAG
AA sequence Show only first row Show all	>Lus10032540 pacid=23146328 polypeptide=Lus10032540 locus=Lus10032540.g ID=Lus10032540.BGIv1.0 annot-version=v1.0 MMNQNKVDALREKRTAEQMIMRGEDFSKAMEHLLRARDLFPPRLDDVESLTAACEILSAANGEINIPGSGVVDHYLILGVDPSASFSDVRSRFHKLTNLL QPLKNKQAYAGFGRRAFTLLDNALLVLTDGEKRTEFDGRRNQCFKDCEIDAASLMPNWSSWSFKDLVAGQIWAVYGMESHYSLPRQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25560			DNAJ heat shock N-terminal dom...		Lus10032540 [exp]	0	1
AT3G24440		VRN5, VIL1	VERNALIZATION 5, VIN3-LIKE 1, ...		Lus10019394 [exp]	1.7	0.8835
AT1G75060			unknown protein		Lus10017506 [exp]	3.0	0.8695
AT2G44150		SDG7, ASHH3	SET DOMAIN-CONTAINING PROTEIN ...		Lus10039118 [exp]	3.6	0.8441
					Lus10035688 [exp]	5.1	0.8775
AT3G13690			Protein kinase protein with ad...		Lus10018944 [exp]	6.3	0.8498
AT1G78590		NADK3, ATNADK-3	ARABIDOPSIS THALIANA NADH KINA...		Lus10010749 [exp]	7.0	0.8028
AT3G63530		BB2, BB	BIG BROTHER, RING/U-box superf...		Lus10016416 [exp]	8.9	0.8642
					Lus10037277 [exp]	9.5	0.8522
AT2G38025			Cysteine proteinases superfami...		Lus10035535 [exp]	9.9	0.7801
AT5G01620		TBL35	TRICHOME BIREFRINGENCE-LIKE 35...		Lus10012229 [exp]	10.2	0.8204

Compare expression of checked genes

Lus10032540 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.