Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23720 1046 / 0 PHS1 PROPYZAMIDE-HYPERSENSITIVE 1, dual specificity protein phosphatase family protein (.1.2.3) AT3G23610 112 / 3e-28 DSPTP1 dual specificity protein phosphatase 1 (.1.2.3) AT3G06110 88 / 8e-20 DSPTP1B, MKP2, ATMKP2 DUAL-SPECIFICITY PROTEIN PHOSPHATASE 1B, ARABIDOPSIS MAPK PHOSPHATASE 2, MAPK phosphatase 2 (.1.2.3) AT3G55270 87 / 4e-17 MKP1, ATMKP1 ARABIDOPSIS MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1, mitogen-activated protein kinase phosphatase 1 (.1) AT2G04550 61 / 6e-10 DSPTP1E, IBR5 DUAL SPECIFICITY PROTEIN PHOSPHATASE 1E, indole-3-butyric acid response 5 (.1.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043195 [exp] 1617 / 0 AT5G23720 1047 / 0.0 PROPYZAMIDE-HYPERSENSITIVE 1, dual specificity protein phosphatase family protein (.1.2.3) Lus10021940 [exp] 100 / 5e-24 AT3G23610 248 / 1e-84 dual specificity protein phosphatase 1 (.1.2.3) Lus10034033 [exp] 86 / 1e-19 AT3G23610 168 / 5e-54 dual specificity protein phosphatase 1 (.1.2.3) Lus10041227 [exp] 88 / 3e-19 AT3G23610 237 / 4e-80 dual specificity protein phosphatase 1 (.1.2.3) Lus10036877 [exp] 87 / 3e-17 AT3G23610 511 / 3e-171 dual specificity protein phosphatase 1 (.1.2.3) Lus10006229 [exp] 87 / 3e-17 AT3G23610 512 / 1e-171 dual specificity protein phosphatase 1 (.1.2.3) Lus10030324 [exp] 84 / 4e-16 AT3G55270 806 / 0.0 ARABIDOPSIS MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1, mitogen-activated protein kinase phosphatase 1 (.1) Lus10003291 [exp] 84 / 5e-16 AT3G55270 800 / 0.0 ARABIDOPSIS MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1, mitogen-activated protein kinase phosphatase 1 (.1) Lus10002263 [exp] 62 / 6e-10 AT2G04550 327 / 1e-113 DUAL SPECIFICITY PROTEIN PHOSPHATASE 1E, indole-3-butyric acid response 5 (.1.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G105000 [exp] 1224 / 0 AT5G23720 1096 / 0.0 PROPYZAMIDE-HYPERSENSITIVE 1, dual specificity protein phosphatase family protein (.1.2.3) Potri.012G105800 [exp] 1170 / 0 AT5G23720 1006 / 0.0 PROPYZAMIDE-HYPERSENSITIVE 1, dual specificity protein phosphatase family protein (.1.2.3) Potri.010G033000 [exp] 96 / 2e-22 AT3G23610 249 / 4e-85 dual specificity protein phosphatase 1 (.1.2.3) Potri.010G210900 [exp] 90 / 4e-18 AT3G55270 715 / 0.0 ARABIDOPSIS MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1, mitogen-activated protein kinase phosphatase 1 (.1) Potri.008G049900 [exp] 89 / 6e-18 AT3G55270 710 / 0.0 ARABIDOPSIS MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1, mitogen-activated protein kinase phosphatase 1 (.1) Potri.014G160500 [exp] 62 / 6e-10 AT2G04550 333 / 6e-116 DUAL SPECIFICITY PROTEIN PHOSPHATASE 1E, indole-3-butyric acid response 5 (.1.3) Potri.016G035700 [exp] 61 / 2e-09 AT4G18593 149 / 3e-44 dual specificity protein phosphatase-related (.1) Potri.006G040300 [exp] 60 / 3e-09 AT4G18593 148 / 5e-44 dual specificity protein phosphatase-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0031 [flax] [poplar] Phosphatase PF00782 [flax] [poplar] DSPc Dual specificity phosphatase, catalytic domain CL0016 [flax] [poplar] PKinase PF09192 [flax] [poplar] Act-Frag_cataly Actin-fragmin kinase, catalytic
Representative CDS sequence Show only first row Show all	>Lus10032545 pacid=23146272 polypeptide=Lus10032545 locus=Lus10032545.g ID=Lus10032545.BGIv1.0 annot-version=v1.0 ATGCTCCAGGAGAAAGAAGAAGAGGAAGAAGAGAGGGAGTTGGAGTTGGGATCCGACGAGCCGCAGACTCCTTTACCTCTCACTGTTACATCCCGGGTGC TTTATATGTTGGGAGATATAACAGCAGGTCCTGCTTATCGTTTCACGCAATGGCTGGAGTTGGTCCGTAAACGAAGTGGCGTCAGAAATCGCCCTTCCGG TTTCCACCACCGCCTCCCTAGCTATACTAGCATTCACAAGGTTTCTATTTTCAGTGCAGGAGAAGAAGCACTCTCTGACAACCCAATAATCGATCCACCT CGTGAGCAAGTTCCCGAGATTAGTTTGTGGGATAGGCTTGGTAACGCTGCCATGTTAGACATAGACTCCACTTCTTTTGCCTGGGACATGCTTTCTTCAC TCCATCATAACGAGCACAGCAGTAGCTATGAACAAGCCGAGGACGAAATGACTAAGGCCCTCGAGGTTACTGTAAATTCTGGTGGAGTTGTCTTCTTTGC CTTATTCAACCAACTTCAAACCAGTGATGTGTTCCCGAGAGAAGCTGCAGCTGTGATAAAGTTTTCATCTTCAAGGATGGCCACACAATCAGAACGCCTT GGCTATGAATTTGCAAGATGGTTAGGTGTACGGAGTCCGCAGGCTAGGGTGATTCACAACTTCAGCCCAGAATGGCTCCAAATTAAGGAAGCTTCAGAAA AAGCGAAAGCTGCTGCAGTTTCAGAAGGAGATGAAGTCGGTGAAGTGACATGTTCAGAACTCTTGGAAGCTCTAGAACTAAGTCGATGTCTATTTCTGAT GAGTTATGTTCATGGATCTCCTCTACTGGAAAGCTCCAATGCATTTGAGTCTCCTGAATATGCAGAAAAAACTGCGGCAGCACTTGGTAGGGTGTTGATG TTGGATCTCATAATCCGCAATGAAGATAGACTTCCCTGTCGTGATTTGAGATGGCGTGGAAATTCGGCAAACTTGCTGTTGGCTGATAAAGTGACTTCCA CAAATTTGGATGAAATGGGGGATTTCTACGATTCTGCAATCAGGAAACTACAACCAAGAATGGCTAGAGCTCTTCAAAGTGATAGGAGGACAAGCTCAGT GGATATCAAAGTTGATTCCCACAACCGAAGAATGTCACAAGGATCTGATCTTTCTGATGTAATAGAATCACAAAAAAGTAGCAGCCAAGCCCTGGTAAGA CAGGCTTCTGAAGATTCGGTTCTATCTGATCTTTCAAGTTTTCATATCGTGGCTATAGATTCTGGTGTTCCTCGAAGACCTCCTGCTGGAAAACGTGCAA ATGATCACGAAAGCTATCCTAAATTGGTGGAGTTACTTCTAAACAGTCCAGACTATGCCTCAAACTTGTTGCATGACATAACTTGTGGAAAATTAGGTTC TCCATCTGAAGACGATGACAACAATAGTCGGAATCTTATGAATCCGGATTCATCAGTCAAGTACTTCCGTGGTGGGTTTCGTGGTGCTCTCAGAGATCTC CAAGGATTCCATATATTCCTTCTCACACTTCACCAGAAGCTGGATGGCTTACTGCGAACATTCCTGAGCATTACAAGCAAAACAAATTCAGGAGACTCGG ATAGAGAGGATTTTACGACTCCAGAGTCACCTCGTGTTCGTTGCCCTTCACCACCAAGCAAGGACAAGTTTTTCAATGATAACCATTCAGATCTCATCGA CTCACCTGCTCCAAAGTCAGCACCTTCAGGAAATAGAGATACACCTGACACTAGTTCTCCCCTTCTAAAAGAGAATTGGCACGGGAGGTTGTCAAAGGGA GGTGGAGACCAGCTGCGTAGCTTCCGCTTAACAACAAAGCTTCGCGACCTCCAAAAGTTTGCCAAGTGTGACATGGAATCAAATAAAGATCTCGAACAGT GGAATGAGATGCTCAGAAATGATGTTATCAAGCTGTGCCAGGAGAACAATTTCAACACTGGGTTTTTCGAAGGAAGTGATAGTAATGGTATCGTCGATGC CTATGAGTTGAAGGTAAGACTCGAGCACATCCTCGAGAGGATATCACTAATATCTGATGCCGCAAACACTGAGAAACCATCATCAATTACGAGCTGTCTA TTTATCGGCGGAGCTCTGGCTGCTAGGTCTCTTTACACTTTGCAATACCTGGGAATCACTCATATACTATGTCTTTGTGCCAATGAGATTGGTCAGTCGG ATTCTCAGCGTCAAGATCTATTCGAGTACAAGAACTATTCTATATGTGACAGAGAAGATTCAAACATCAGCAGCATCTTTGATGATGCCTCTGACTACAT CGATCATGTCGAGTCAACTGGTGGGAAAGTTCTAGTTCACTGTTTTGAAGGCAAAAGTAGGAGTGCAACCTTAGTTCTGGCCTATTTGATGCTCAGAAAA AACTTCACACTTGCACAGGCATGGAACAGCCTAAGGCGAGTCCACCGGAGAGCACAGCCGAACGATGGGTTTGCAAGGGTGTTGTTGGAGCTCGACAAGA AACTGCACGGCAAAGTTTCGATGGAGTGGCAACAACGGAAACCCATGATGAAAGTCTGTCCCATCTGTGGGAAGAATGCTGGTCTAAGCAGCAGTTCACT GAAGCTCCATCTGCAAAAATCACATAAGAAGATCTCGTCAGGGAGTGTGGATAGCGCCATGACCATGGAAATCGAGAAGGCCTTGGAAGCACTGAGATTA ACCAGAAGTGGTAGTGCCAGCCCTACGCCAACGCAGTCTTCCATGGCTAATATGGATGAGTAG
AA sequence Show only first row Show all	>Lus10032545 pacid=23146272 polypeptide=Lus10032545 locus=Lus10032545.g ID=Lus10032545.BGIv1.0 annot-version=v1.0 MLQEKEEEEEERELELGSDEPQTPLPLTVTSRVLYMLGDITAGPAYRFTQWLELVRKRSGVRNRPSGFHHRLPSYTSIHKVSIFSAGEEALSDNPIIDPP REQVPEISLWDRLGNAAMLDIDSTSFAWDMLSSLHHNEHSSSYEQAEDEMTKALEVTVNSGGVVFFALFNQLQTSDVFPREAAAVIKFSSSRMATQSERL GYEFARWLGVRSPQARVIHNFSPEWLQIKEASEKAKAAAVSEGDEVGEVTCSELLEALELSRCLFLMSYVHGSPLLESSNAFESPEYAEKTAAALGRVLM LDLIIRNEDRLPCRDLRWRGNSANLLLADKVTSTNLDEMGDFYDSAIRKLQPRMARALQSDRRTSSVDIKVDSHNRRMSQGSDLSDVIESQKSSSQALVR QASEDSVLSDLSSFHIVAIDSGVPRRPPAGKRANDHESYPKLVELLLNSPDYASNLLHDITCGKLGSPSEDDDNNSRNLMNPDSSVKYFRGGFRGALRDL QGFHIFLLTLHQKLDGLLRTFLSITSKTNSGDSDREDFTTPESPRVRCPSPPSKDKFFNDNHSDLIDSPAPKSAPSGNRDTPDTSSPLLKENWHGRLSKG GGDQLRSFRLTTKLRDLQKFAKCDMESNKDLEQWNEMLRNDVIKLCQENNFNTGFFEGSDSNGIVDAYELKVRLEHILERISLISDAANTEKPSSITSCL FIGGALAARSLYTLQYLGITHILCLCANEIGQSDSQRQDLFEYKNYSICDREDSNISSIFDDASDYIDHVESTGGKVLVHCFEGKSRSATLVLAYLMLRK NFTLAQAWNSLRRVHRRAQPNDGFARVLLELDKKLHGKVSMEWQQRKPMMKVCPICGKNAGLSSSSLKLHLQKSHKKISSGSVDSAMTMEIEKALEALRL TRSGSASPTPTQSSMANMDE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23720		PHS1	PROPYZAMIDE-HYPERSENSITIVE 1, ...		Lus10032545 [exp]	0	1
AT1G60060			Serine/threonine-protein kinas...		Lus10012986 [exp]	2.2	0.9270
AT5G50150			Protein of Unknown Function (D...		Lus10039949 [exp]	3.2	0.9159
AT3G63430			unknown protein		Lus10003090 [exp]	3.5	0.9073
AT3G58640			Mitogen activated protein kina...		Lus10020708 [exp]	4.9	0.9043
					Lus10020368 [exp]	5.5	0.8833
AT2G32990		ATGH9B8	glycosyl hydrolase 9B8 (.1)		Lus10030008 [exp]	5.5	0.9043
AT3G59140		ATMRP14, ABCC10	ATP-binding cassette C10, mult...		Lus10028740 [exp]	5.7	0.8673
AT5G62550			unknown protein		Lus10024245 [exp]	6.2	0.8734
AT4G39050			Kinesin motor family protein (...		Lus10028790 [exp]	6.7	0.8679
AT4G00752			UBX domain-containing protein ...		Lus10036564 [exp]	7.9	0.8876

Compare expression of checked genes

Lus10032545 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.