Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48860 556 / 0 unknown protein AT5G23700 492 / 3e-170 unknown protein AT5G13260 430 / 2e-146 unknown protein AT4G25070 421 / 6e-140 unknown protein AT4G08630 310 / 2e-96 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043194 [exp] 853 / 0 AT3G48860 684 / 0.0 unknown protein Lus10036015 [exp] 717 / 0 AT3G48860 675 / 0.0 unknown protein Lus10016721 [exp] 689 / 0 AT3G48860 674 / 0.0 unknown protein Lus10001801 [exp] 464 / 9e-160 AT5G13260 591 / 0.0 unknown protein Lus10002574 [exp] 446 / 4e-152 AT5G13260 566 / 0.0 unknown protein Lus10001720 [exp] 319 / 9e-101 AT4G08630 471 / 5e-155 unknown protein Lus10004138 [exp] 297 / 2e-92 AT4G08630 464 / 2e-152 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G105400 [exp] 621 / 0 AT3G48860 546 / 0.0 unknown protein Potri.015G104600 [exp] 538 / 0 AT3G48860 452 / 3e-153 unknown protein Potri.001G065800 [exp] 526 / 0 AT3G48860 528 / 0.0 unknown protein Potri.003G164100 [exp] 517 / 2e-180 AT5G13260 529 / 0.0 unknown protein Potri.005G044600 [exp] 398 / 7e-132 AT4G08630 436 / 5e-142 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032546 pacid=23146442 polypeptide=Lus10032546 locus=Lus10032546.g ID=Lus10032546.BGIv1.0 annot-version=v1.0 ATGGATCGTAGGAGGGCTGGAAGTCCGGTATATGGGCGGCAGTGGAGTGGTGCATCTAGCAGCACGGGGGCAGCTCCTCCTACTTCGTCTTTTGGTAGCA GTGCTAATCAGAACGGGAGGAATAGTGCTACTCCTGCCATTTCATTCACTAGAGGGAACAGATCTCCGTCACCTGCGTTAGGTCGAAACTTTGTAGAGCA AGTTACTCAGCCTCGATCCTCATCAACAGGACGGGCCACCATGTCTGTTCGAACTTCTCTGATGGCGTCTAGTAAGTCAACTTTAAGGACTCACATGCCT ATACCTGCCATAGATCCTACAGCCATCAAGAGCCGAGATAAAAGGTTTACTCCGGATGTGCGGCAATTTGAGAAAGACAATGGAGATAAGCGTGAAGCAT CTGCTATTCGGGATGAACTTGATATGCTACAAGAGGAAAACGAGGTCATGCTTGACAAGCTTCGGCGGGCAGAAGAAAGACGTGAGCAAGCAGAGGCCAG GGCAAAGGAACTTGAGAAGCAGGTAGCTGCTCTTGGTGAAGGTGTTTCCCTTGAAGCTAAACTCTTAAGCAGGAAAGAAGCAGCATTACGTCAAAGAGAG GCTGCTCTAAAGGCGGCAAAGCAAACGAAAGATGGGAGAAATGAGGAAGTTGCATCTCTTCGTACAGAGCTTGAGACTCTAAAGGATGAGACGGCAACAG CTGTGGAGCAGCTGCGAGAATCAGAAAGTGAAGCCAAAGCACTTCGCACCATGACACAGAGAATGATTTTGACTAAAGAAGAGATGGAGGAAGTAGTTCT AAAGCGATGTTGGCTTGCTCGATACTGGGGTCTGGCTGTGCAACACGGCATTGATGCTGACATTGCAGCTTCAAAGCATGAACATTGGTCTGCTTTAGCT CCCCTTCCATTTGAGATCGTCATTTCAGCTGGACAGAAAGCAAAGGAAGAAACTTGGGACAAAGCTGGCAGTGATTCAGATAGGAGTAAACCTGCTCGTG ATTTGAGTGATTTAACAGGAGAAGGAAACATTGAGAGCATGCTTTCGGTGGAAATGGGGCTGAGAGAATTAGCGTCTTTGAAGGTTGAGGATGCTATTGT GCTTGCATTGGCTCAGCACAGACGAGCATATTTGAAATCTCTTGGTGAACCCAAGTATCCTGAAGCCTTTGAGTTAAGCGAAGCACAGACAGAAGATGTT CTTTTCAAGGAGGCATGGCTGACGTATTACTGGAGGAGAGCCAAGGTGCATGGCGTGGAAGAGGATATTGCAGAAGAGCGTCTTCAAGTTTGGATCAGCC GAAGTGGGAAGGCACCAACCTCACAGGATGCTGTAGATGTGGAGCGAGGGTTGGTGGAGCTAAGGAAGTTGAGCATAGAACAACAACTTTGGGAAGCATC GCGTAAAGAAATTGATCTTCAGCCTTCACCTGGTAATCATAAATCACCCACAGATTCCGACCTCTCGTCGTAA
AA sequence Show only first row Show all	>Lus10032546 pacid=23146442 polypeptide=Lus10032546 locus=Lus10032546.g ID=Lus10032546.BGIv1.0 annot-version=v1.0 MDRRRAGSPVYGRQWSGASSSTGAAPPTSSFGSSANQNGRNSATPAISFTRGNRSPSPALGRNFVEQVTQPRSSSTGRATMSVRTSLMASSKSTLRTHMP IPAIDPTAIKSRDKRFTPDVRQFEKDNGDKREASAIRDELDMLQEENEVMLDKLRRAEERREQAEARAKELEKQVAALGEGVSLEAKLLSRKEAALRQRE AALKAAKQTKDGRNEEVASLRTELETLKDETATAVEQLRESESEAKALRTMTQRMILTKEEMEEVVLKRCWLARYWGLAVQHGIDADIAASKHEHWSALA PLPFEIVISAGQKAKEETWDKAGSDSDRSKPARDLSDLTGEGNIESMLSVEMGLRELASLKVEDAIVLALAQHRRAYLKSLGEPKYPEAFELSEAQTEDV LFKEAWLTYYWRRAKVHGVEEDIAEERLQVWISRSGKAPTSQDAVDVERGLVELRKLSIEQQLWEASRKEIDLQPSPGNHKSPTDSDLSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48860			unknown protein		Lus10032546 [exp]	0	1
AT2G16090		ATARI2, ARI2, A...	ARABIDOPSIS ARIADNE 2, ARIADNE...		Lus10026319 [exp]	1.4	0.8920
AT2G42780			unknown protein		Lus10031380 [exp]	5.7	0.8731
AT1G48840			Plant protein of unknown funct...		Lus10020973 [exp]	7.5	0.8676
AT3G59910			Ankyrin repeat family protein ...		Lus10010581 [exp]	7.7	0.8579
AT4G32250			Protein kinase superfamily pro...		Lus10001499 [exp]	8.1	0.8660
AT2G26000		BRIZ2	BRAP2 RING ZnF UBP domain-cont...		Lus10021683 [exp]	9.0	0.8372
AT5G60580			RING/U-box superfamily protein...		Lus10022585 [exp]	9.5	0.8636
AT5G55600			agenet domain-containing prote...		Lus10016606 [exp]	12.0	0.8405
AT2G02360		ATPP2-B10	phloem protein 2-B10 (.1)		Lus10007926 [exp]	12.2	0.8317
AT5G67380		ATCKA1, CKA1	casein kinase alpha 1 (.1.2)		Lus10019288 [exp]	12.5	0.8689

Compare expression of checked genes

Lus10032546 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.