Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48820 673 / 0 Glycosyltransferase family 29 (sialyltransferase) family protein (.1), Glycosyltransferase family 29 (sialyltransferase) family protein (.2) AT1G08660 349 / 2e-116 MGP2 MALE GAMETOPHYTE DEFECTIVE 2 (.1.2) AT1G08280 51 / 8e-07 Glycosyltransferase family 29 (sialyltransferase) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043193 [exp] 830 / 0 AT3G48820 697 / 0.0 Glycosyltransferase family 29 (sialyltransferase) family protein (.1), Glycosyltransferase family 29 (sialyltransferase) family protein (.2) Lus10031992 [exp] 359 / 3e-120 AT1G08660 743 / 0.0 MALE GAMETOPHYTE DEFECTIVE 2 (.1.2) Lus10035162 [exp] 358 / 8e-120 AT1G08660 742 / 0.0 MALE GAMETOPHYTE DEFECTIVE 2 (.1.2) Lus10019538 [exp] 57 / 2e-08 AT1G08280 454 / 2e-159 Glycosyltransferase family 29 (sialyltransferase) family protein (.1) Lus10043382 [exp] 52 / 2e-07 AT1G08280 186 / 7e-57 Glycosyltransferase family 29 (sialyltransferase) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G104100 [exp] 684 / 0 AT3G48820 730 / 0.0 Glycosyltransferase family 29 (sialyltransferase) family protein (.1), Glycosyltransferase family 29 (sialyltransferase) family protein (.2) Potri.014G145400 [exp] 333 / 6e-110 AT1G08660 776 / 0.0 MALE GAMETOPHYTE DEFECTIVE 2 (.1.2) Potri.009G144000 [exp] 56 / 3e-08 AT1G08280 416 / 9e-145 Glycosyltransferase family 29 (sialyltransferase) family protein (.1) Potri.004G184200 [exp] 55 / 6e-08 AT1G08280 467 / 1e-164 Glycosyltransferase family 29 (sialyltransferase) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00777 [flax] [poplar] Glyco_transf_29 Glycosyltransferase family 29 (sialyltransferase)
Representative CDS sequence Show only first row Show all	>Lus10032547 pacid=23146430 polypeptide=Lus10032547 locus=Lus10032547.g ID=Lus10032547.BGIv1.0 annot-version=v1.0 ATGAGGACCCTGAAGTTCGGATTCTTGCTCGCTTTGGCATCTGGACTCTCCGCCATTCTCATCTACATCAACGGCGTCACCAATTTCGATGGGATCCAGA GATTGTCCAGTGAAGAAGTCGAAGCTTTGCAATCTCTACAATCCAGTTTCAGGAAGTGCGTGTATGAAGTTCTTTTGTTGGGGGAACTTGTGATGCAGAA AGCCAATGGATTAGGTCTTGAGGCTTTTCCAGGGAATGATTATTGCTCGGTATCCATTAATTTCCCAAGCGACACTGACTCTAAATGGATAGATCCTAAA ACAGGAGAACGAGAAGGTTTATCTTTCGAATTCAATCTATGTGAAGCAGTGGCGAACTGGGAGCAGGTTATGAACAGTACTACTATACTTACTAAGGAAT TCATAGACGCACTTCCCAATGGATGGGAGGACTATGCCTGGCGTCGTATCAATAAAGGAATTCAGCTTAACCGATGTCAGAACAAAACGTTGTGTATGGA GAAGCTCAAACTTGTATTGCCTGAAACACCACCTTATGTTCCCAAACAGTTCGGCCGGTGTGCTGTTATTGGTAATTCAGGTGATCTTTTGAAAACTAGG TTTGGCAAAGAAATTGATGGTTATGATGTTGTCATAAGAGAAAATGGTGCTCCTATTCAGAACTACACGGAATACGTGGGCACGAAAAGTTCCTTCCGCC TACTGAATAGGGGTTCTGCAAAGGCTCTTGATAAAGTTGTGGAGTTAGATGAGTCAAGGAAGGAGGTGCTGATCGTCAAAACGACAATACATGACATTAT GAACCAAATGATCCAGGAAATTCCAATAAGAAATCCTGTCTACCTTATGTTAGGTGCATCGTTTGGGTCAGCAGCGAAAGGGACTGGGCTGAAAGCACTC GAGTTTGCTCTATCTATGTGCGAGTCTGTTGATATGTATGGTTTCACTGTTGATCCGGGATACAAAGAATGGACTAGATACTTCTCGGAATCTCGAAAGG GTCACACTCCTCTTCACGGGAGAGCTTACTACCAAATGATGGAGTGTCTGGGTCTGATCAAGATTCATTCTCCTTTGCGAGCTGATCCTAACCGTGTCGT GAAATGGGTTCCAAGCAAGAGTACTATAGCCGCTGCTACAGCTGGATCAGAGAAACTATTGAGGAGGGTCGGAGCAGGGTATACAGACCCACTGCGGGCG TGTGAAATAAAGAAGCAGGTTAAAAGGAAGCCGAAACCTGGTCCAAGCAAGAGGAAAGTTGCTCTTGATCATCAAAAGTCCTTGAAAGGGGCAACATTGT ACCCTTTGGAACACAATCCTGGACATGGTATGCTCTGTACATTCCCAACAGATTGA
AA sequence Show only first row Show all	>Lus10032547 pacid=23146430 polypeptide=Lus10032547 locus=Lus10032547.g ID=Lus10032547.BGIv1.0 annot-version=v1.0 MRTLKFGFLLALASGLSAILIYINGVTNFDGIQRLSSEEVEALQSLQSSFRKCVYEVLLLGELVMQKANGLGLEAFPGNDYCSVSINFPSDTDSKWIDPK TGEREGLSFEFNLCEAVANWEQVMNSTTILTKEFIDALPNGWEDYAWRRINKGIQLNRCQNKTLCMEKLKLVLPETPPYVPKQFGRCAVIGNSGDLLKTR FGKEIDGYDVVIRENGAPIQNYTEYVGTKSSFRLLNRGSAKALDKVVELDESRKEVLIVKTTIHDIMNQMIQEIPIRNPVYLMLGASFGSAAKGTGLKAL EFALSMCESVDMYGFTVDPGYKEWTRYFSESRKGHTPLHGRAYYQMMECLGLIKIHSPLRADPNRVVKWVPSKSTIAAATAGSEKLLRRVGAGYTDPLRA CEIKKQVKRKPKPGPSKRKVALDHQKSLKGATLYPLEHNPGHGMLCTFPTD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48820			Glycosyltransferase family 29 ...		Lus10032547 [exp]	0	1
AT4G17910			transferases, transferring acy...		Lus10001270 [exp]	3.0	0.8317
AT3G55020			Ypt/Rab-GAP domain of gyp1p su...		Lus10041425 [exp]	5.3	0.8467
AT5G28850			Calcium-binding EF-hand family...		Lus10032772 [exp]	8.2	0.8491
AT4G27080		ATPDI7, ATPDIL5...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10043062 [exp]	8.8	0.8207
AT1G71270		ATVPS52, TTD8, ...	T-DNA TRANSMISSION DEFECT 8, P...		Lus10040815 [exp]	11.2	0.8153
AT1G20540			Transducin/WD40 repeat-like su...		Lus10021818 [exp]	20.8	0.7567
AT1G79650		AtAO1, RAD23B, ...	RADIATION SENSITIVE23B, Arabid...		Lus10008710 [exp]	21.3	0.8424
AT2G34970			Trimeric LpxA-like enzyme (.1)		Lus10033841 [exp]	24.9	0.8269
AT4G28650			Leucine-rich repeat transmembr...		Lus10025943 [exp]	31.4	0.8391
AT2G30130	AS2	PCK1, LBD12, AS...	PEACOCK 1, Lateral organ bound...		Lus10031855 [exp]	42.4	0.8321

Compare expression of checked genes

Lus10032547 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.