Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03700 55 / 2e-09 Uncharacterised protein family (UPF0497) (.1) AT4G03540 51 / 5e-08 Uncharacterised protein family (UPF0497) (.1) AT5G15290 47 / 2e-06 CASP5 Casparian strip membrane domain protein 5, Uncharacterised protein family (UPF0497) (.1) AT4G25040 46 / 3e-06 Uncharacterised protein family (UPF0497) (.1) AT1G14160 45 / 7e-06 Uncharacterised protein family (UPF0497) (.1) AT2G27370 45 / 1e-05 CASP3 Casparian strip membrane domain protein 3, Uncharacterised protein family (UPF0497) (.1) AT4G15620 44 / 3e-05 Uncharacterised protein family (UPF0497) (.1) AT4G15630 43 / 4e-05 Uncharacterised protein family (UPF0497) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043192 [exp] 144 / 3e-44 AT4G25040 61 / 3e-12 Uncharacterised protein family (UPF0497) (.1) Lus10031998 [exp] 76 / 9e-17 AT4G15620 80 / 1e-18 Uncharacterised protein family (UPF0497) (.1) Lus10012562 [exp] 75 / 3e-16 AT4G15620 77 / 1e-17 Uncharacterised protein family (UPF0497) (.1) Lus10041528 [exp] 73 / 3e-16 AT4G15620 74 / 5e-17 Uncharacterised protein family (UPF0497) (.1) Lus10035168 [exp] 71 / 6e-15 AT4G15620 78 / 8e-18 Uncharacterised protein family (UPF0497) (.1) Lus10032005 [exp] 60 / 1e-11 AT4G15620 65 / 1e-13 Uncharacterised protein family (UPF0497) (.1) Lus10033971 [exp] 60 / 2e-11 AT4G15630 162 / 1e-51 Uncharacterised protein family (UPF0497) (.1) Lus10012809 [exp] 59 / 2e-10 AT4G15630 179 / 4e-57 Uncharacterised protein family (UPF0497) (.1) Lus10033007 [exp] 44 / 2e-05 AT5G15290 216 / 3e-72 Casparian strip membrane domain protein 5, Uncharacterised protein family (UPF0497) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G103600 [exp] 84 / 5e-20 AT4G25040 90 / 9e-23 Uncharacterised protein family (UPF0497) (.1) Potri.012G104300 [exp] 84 / 6e-20 AT4G25040 97 / 7e-26 Uncharacterised protein family (UPF0497) (.1) Potri.001G323700 [exp] 62 / 5e-12 AT4G15620 75 / 8e-17 Uncharacterised protein family (UPF0497) (.1) Potri.017G062100 [exp] 58 / 2e-10 AT4G25040 82 / 6e-20 Uncharacterised protein family (UPF0497) (.1) Potri.019G100300 [exp] 52 / 2e-08 AT1G03700 150 / 6e-47 Uncharacterised protein family (UPF0497) (.1) Potri.013G131700 [exp] 50 / 2e-07 AT1G03700 159 / 9e-50 Uncharacterised protein family (UPF0497) (.1) Potri.008G205100 [exp] 44 / 1e-05 AT4G15630 144 / 1e-43 Uncharacterised protein family (UPF0497) (.1) Potri.011G052100 [exp] 42 / 5e-05 AT4G03540 100 / 2e-27 Uncharacterised protein family (UPF0497) (.1) Potri.011G154900 [exp] 40 / 0.0003 AT4G20390 169 / 1e-53 Uncharacterised protein family (UPF0497) (.1) Potri.004G043300 [exp] 40 / 0.0004 AT4G03540 103 / 2e-28 Uncharacterised protein family (UPF0497) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0396 [flax] [poplar] Marvel-like PF04535 [flax] [poplar] DUF588 Domain of unknown function (DUF588)
Representative CDS sequence Show only first row Show all	>Lus10032548 pacid=23146310 polypeptide=Lus10032548 locus=Lus10032548.g ID=Lus10032548.BGIv1.0 annot-version=v1.0 ATGGCGGCCATTACTGATGATGATCTTCAAAAGTACTCATCACAACACACTAAGTACGTCCACCAGAGCAGTAACACTACTAATCCCCCTCCTCAAACCA AAAGGCGGCTTGGAGTCGTGATCTCCGCCTCTCAGTTGACCCTCCGAGCTCTCAGCTTCGCATTCACACTGTCCGCGGCTCTTTCCACTGTCACCAACAT TCAGCGCACGGAGGTCCTCCCTGGCTTCGTCCTCGTCGCTCGCTACTCCTACTCCTCCTCCCTCAGGTTCTTCGTGGTGGCGAACTTGGTGGGGTCCGCA TTCTCGCTGTTTTCGCTGCTGTATTTATTCAAGAGGCGAACTGGCTCCTTCTACATTCCACCGCCGCAGCACTACGCTTTCGTCCTCTTCATCCACGACT TGCTGATCACGGCGATTCTGCTGGCGGGGTGTTCCGCCGCCACGGCGATCGGACTGGTGGCGGAAAACGGAGTGGCCAGCTCTGGTTGGATGCCCATTTG CAACCGCTTCCACCGTTTCTGCAACGTCCCGTTGCGACAACGTAGGATCCGTCTCTCTCGCTCTCTCTTACTCGTCATTTCTCTCTTTCTTCATCCTCAC CGTCCTGTCCGCCGCCATGTCCAAACACGTTGA
AA sequence Show only first row Show all	>Lus10032548 pacid=23146310 polypeptide=Lus10032548 locus=Lus10032548.g ID=Lus10032548.BGIv1.0 annot-version=v1.0 MAAITDDDLQKYSSQHTKYVHQSSNTTNPPPQTKRRLGVVISASQLTLRALSFAFTLSAALSTVTNIQRTEVLPGFVLVARYSYSSSLRFFVVANLVGSA FSLFSLLYLFKRRTGSFYIPPPQHYAFVLFIHDLLITAILLAGCSAATAIGLVAENGVASSGWMPICNRFHRFCNVPLRQRRIRLSRSLLLVISLFLHPH RPVRRHVQTR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03700			Uncharacterised protein family...		Lus10032548 [exp]	0	1
AT1G13890		ATSNAP30, SNAP3...	soluble N-ethylmaleimide-sensi...		Lus10037092 [exp]	1.0	0.8261
AT2G15220			Plant basic secretory protein ...		Lus10001607 [exp]	2.4	0.7766
AT3G02100			UDP-Glycosyltransferase superf...		Lus10015749 [exp]	15.9	0.7755
AT4G19170		CCD4, NCED4	carotenoid cleavage dioxygenas...		Lus10037286 [exp]	15.9	0.7644
AT3G47570			Leucine-rich repeat protein ki...		Lus10040185 [exp]	16.8	0.8031
AT4G16730		AtTPS02	terpene synthase 02 (.1)		Lus10006357 [exp]	18.2	0.7912
AT3G15270	SBP	SPL5	squamosa promoter binding prot...		Lus10005548 [exp]	20.9	0.7820
AT2G04740			ankyrin repeat family protein ...		Lus10006408 [exp]	22.4	0.7731
					Lus10039892 [exp]	25.2	0.7809
AT3G29240			Protein of unknown function (D...		Lus10030695 [exp]	31.7	0.6560

Compare expression of checked genes

Lus10032548 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.