Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50850 627 / 0 MAB1 MACCI-BOU, Transketolase family protein (.1) AT1G30120 278 / 8e-89 PDH-E1 BETA, PDH-E1BETA pyruvate dehydrogenase E1 beta (.1) AT2G34590 277 / 2e-88 Transketolase family protein (.1) AT1G55510 221 / 8e-68 BCDH BETA1, BCDHBETA1 branched-chain alpha-keto acid decarboxylase E1 beta subunit (.1) AT3G13450 221 / 2e-67 DIN4 DARK INDUCIBLE 4, Transketolase family protein (.1) AT4G15560 74 / 2e-13 AtCLA1, DXS, DXPS2, DEF, CLA1 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) AT3G21500 68 / 6e-12 DXPS1 1-deoxy-D-xylulose 5-phosphate synthase 1 (.1.2) AT5G11380 58 / 1e-08 DXPS3 1-deoxy-D-xylulose 5-phosphate synthase 3 (.1.2) AT1G67590 56 / 4e-08 Remorin family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043191 [exp] 751 / 0 AT5G50850 635 / 0.0 MACCI-BOU, Transketolase family protein (.1) Lus10032550 [exp] 661 / 0 AT5G50850 613 / 0.0 MACCI-BOU, Transketolase family protein (.1) Lus10038505 [exp] 274 / 2e-87 AT2G34590 693 / 0.0 Transketolase family protein (.1) Lus10023304 [exp] 273 / 8e-87 AT2G34590 687 / 0.0 Transketolase family protein (.1) Lus10010324 [exp] 214 / 6e-65 AT1G55510 619 / 0.0 branched-chain alpha-keto acid decarboxylase E1 beta subunit (.1) Lus10013401 [exp] 216 / 2e-64 AT1G55510 622 / 0.0 branched-chain alpha-keto acid decarboxylase E1 beta subunit (.1) Lus10039361 [exp] 146 / 3e-42 AT5G50850 135 / 9e-40 MACCI-BOU, Transketolase family protein (.1) Lus10015817 [exp] 127 / 5e-32 AT1G67590 280 / 5e-92 Remorin family protein (.1.2) Lus10026481 [exp] 118 / 2e-31 AT1G67590 63 / 2e-12 Remorin family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G061400 [exp] 662 / 0 AT5G50850 640 / 0.0 MACCI-BOU, Transketolase family protein (.1) Potri.003G166400 [exp] 662 / 0 AT5G50850 636 / 0.0 MACCI-BOU, Transketolase family protein (.1) Potri.017G076500 [exp] 279 / 2e-89 AT2G34590 671 / 0.0 Transketolase family protein (.1) Potri.004G129800 [exp] 275 / 1e-87 AT2G34590 634 / 0.0 Transketolase family protein (.1) Potri.003G222800 [exp] 216 / 2e-65 AT1G55510 632 / 0.0 branched-chain alpha-keto acid decarboxylase E1 beta subunit (.1) Potri.006G249700 [exp] 71 / 1e-12 AT5G11380 949 / 0.0 1-deoxy-D-xylulose 5-phosphate synthase 3 (.1.2) Potri.008G178300 [exp] 69 / 1e-12 AT1G67590 306 / 1e-102 Remorin family protein (.1.2) Potri.010G056800 [exp] 68 / 3e-12 AT1G67590 253 / 8e-82 Remorin family protein (.1.2) Potri.007G058500 [exp] 68 / 8e-12 AT4G15560 999 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Potri.006G171700 [exp] 67 / 2e-11 AT4G15560 1037 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0254 [flax] [poplar] THDP-binding PF02779 [flax] [poplar] Transket_pyr Transketolase, pyrimidine binding domain CL0591 [flax] [poplar] TKC_like PF02780 [flax] [poplar] Transketolase_C Transketolase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10032549 pacid=23146335 polypeptide=Lus10032549 locus=Lus10032549.g ID=Lus10032549.BGIv1.0 annot-version=v1.0 ATGGCTGGTGGGAAGCAGTGCGAGTCGAGGTGGGAAGACGCGAAGAAATGGCTGGTGGGGTTATCGAGAGGCGGCGGCGGTGGAGGGGGAGGGGATAAGA ATCAGATCCAGCATCCTCGGAATTCGAACGCTGACGATCAGCAGGAGCTGGAGTGCGACGACGAGTCGATTTGGCGTATTAATAAGCCTGCTACCGGCTG TTCGATTAATCCGGTCGTCTCTGCTGCTCCGCTGGTGATTCGGTCGATTTGCGTTAGGGATATGGGGACGGAGGATGATGATGATGAGGAAGAGGATGGG TATTCCAGCGGCGAAAGAGATGGAGAGGTTTCTGTACAAATCGGTAAGACGACGGTGAGAATGTGGGGGATCGTCCGACAAACTCTTTGCCGCCATGGAT CTTCGGCTGTGGCTCTGCAAGGAACTCGCCCTGGGATTCAAATGTTAAGGAGTTTCTCCACCGCCGCAAAAGAGCAACCTTTTCAGATGAATGTAAGGGA AGCTCTCAATTCCGCGATTGATGAAGAAATGTCTGCGGATCCAAAAGTCTTTCTGATGGGAGAGGAGGTTGGAGAATATCAAGGTGCATACAAGATTACT AAAGGTCTCTTGGAGAAGTATGGTCCTGACAGAGTTCTTGATACTCCAATTACGGAGGCTGGATTTACTGGTATTGGAGTTGGCGCAGCTTATCATGGGC TTAAACCTATTGTCGAATTCATGACATTCAACTTCTCCATGCAGGCTATTGATCATATAATTAATTCTGCTGCAAAGTCAAATTACATGTCTGCTGGTCA GATTTCTGTACCTATAGTCTTCAGGGGACCGAATGGTGCGGCTGCTGGAGTCGGTGCCCAGCATTCACATTGCTATGCAGCGTGGTATGCTTCCTGCCCT GGTCTGAAGGTCCTTGCTCCTTATTCATCAGAAGATGCTCGGGGTCTTATGAAGGCTGCCATAAGAGACCCAGATCCAGTTGTCTTCCTGGAAAATGAGC TCTTGTATGGTGAGTCTTTTCCAGTTTCAGAAGAAGTTCTTGATTCTAGTTTCTCTCTTCCCATAGGGAAAGCTAAGATTGAAAGAGAAGGCAAGGACGT AACCATCACTGCTTTCTCAAAGATGGTTGGTTATGCTCTCAAGGCTGCTGATATTCTTGCAAAAGAAGGAATAAGTGCCGAGGTTATAAATCTTCGATCT ATTCGTCCGCTTGATCGAACCACAATCAACAACTCCGTCAGAAAAACGAACAGACTCGTTACCGTCGAAGAAGGATTCCCTCAGCATGGAGTTGGTGCTG AGATATGTGCATCAGTCGTTGAGGAGAGCTTTGGATATCTTGATGCGCCGGTTGAGAGGATTGCCGGAGCAGACGTACCGATGCCTTACGCTGCAAACCT AGAGAGATTGGCTGTCCCTCAGGTTGAAGATATTGTTCGTGCGGCCAAGAGGACTTGCTACAGATCAGCAGCTTCATTGGCTGCTGCAGCGTAG
AA sequence Show only first row Show all	>Lus10032549 pacid=23146335 polypeptide=Lus10032549 locus=Lus10032549.g ID=Lus10032549.BGIv1.0 annot-version=v1.0 MAGGKQCESRWEDAKKWLVGLSRGGGGGGGGDKNQIQHPRNSNADDQQELECDDESIWRINKPATGCSINPVVSAAPLVIRSICVRDMGTEDDDDEEEDG YSSGERDGEVSVQIGKTTVRMWGIVRQTLCRHGSSAVALQGTRPGIQMLRSFSTAAKEQPFQMNVREALNSAIDEEMSADPKVFLMGEEVGEYQGAYKIT KGLLEKYGPDRVLDTPITEAGFTGIGVGAAYHGLKPIVEFMTFNFSMQAIDHIINSAAKSNYMSAGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASCP GLKVLAPYSSEDARGLMKAAIRDPDPVVFLENELLYGESFPVSEEVLDSSFSLPIGKAKIEREGKDVTITAFSKMVGYALKAADILAKEGISAEVINLRS IRPLDRTTINNSVRKTNRLVTVEEGFPQHGVGAEICASVVEESFGYLDAPVERIAGADVPMPYAANLERLAVPQVEDIVRAAKRTCYRSAASLAAAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50850		MAB1	MACCI-BOU, Transketolase famil...		Lus10032549 [exp]	0	1
AT2G28370			Uncharacterised protein family...		Lus10041312 [exp]	3.9	0.8508
AT1G13970			Protein of unknown function (D...		Lus10026633 [exp]	5.2	0.8461
AT4G37930		SHMT1, STM, SHM...	SERINE HYDROXYMETHYLTRANSFERAS...		Lus10042923 [exp]	10.4	0.8713
AT4G27270			Quinone reductase family prote...		Lus10007612 [exp]	11.0	0.8517
AT5G26780		SHM2	serine hydroxymethyltransferas...		Lus10028218 [exp]	11.2	0.8584
AT2G40320		TBL33	TRICHOME BIREFRINGENCE-LIKE 33...		Lus10007529 [exp]	13.8	0.8770
AT5G34940		ATGUS3	glucuronidase 3 (.1.2.3)		Lus10008823 [exp]	15.4	0.8500
AT1G15880		ATGOS11, GOS11	golgi snare 11 (.1)		Lus10014349 [exp]	18.5	0.8423
AT1G77590		LACS9	long chain acyl-CoA synthetase...		Lus10025657 [exp]	20.0	0.8298
AT1G24350			Acid phosphatase/vanadium-depe...		Lus10036984 [exp]	22.8	0.8046

Compare expression of checked genes

Lus10032549 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.