Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50850 614 / 0 MAB1 MACCI-BOU, Transketolase family protein (.1) AT1G30120 275 / 3e-90 PDH-E1 BETA, PDH-E1BETA pyruvate dehydrogenase E1 beta (.1) AT2G34590 273 / 1e-89 Transketolase family protein (.1) AT1G55510 219 / 6e-69 BCDH BETA1, BCDHBETA1 branched-chain alpha-keto acid decarboxylase E1 beta subunit (.1) AT3G13450 215 / 2e-67 DIN4 DARK INDUCIBLE 4, Transketolase family protein (.1) AT3G21500 68 / 2e-12 DXPS1 1-deoxy-D-xylulose 5-phosphate synthase 1 (.1.2) AT4G15560 68 / 3e-12 AtCLA1, DXS, DXPS2, DEF, CLA1 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) AT5G11380 59 / 2e-09 DXPS3 1-deoxy-D-xylulose 5-phosphate synthase 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043191 [exp] 670 / 0 AT5G50850 635 / 0.0 MACCI-BOU, Transketolase family protein (.1) Lus10032549 [exp] 665 / 0 AT5G50850 628 / 0.0 MACCI-BOU, Transketolase family protein (.1) Lus10038505 [exp] 272 / 6e-89 AT2G34590 693 / 0.0 Transketolase family protein (.1) Lus10023304 [exp] 272 / 7e-89 AT2G34590 687 / 0.0 Transketolase family protein (.1) Lus10013401 [exp] 212 / 3e-65 AT1G55510 622 / 0.0 branched-chain alpha-keto acid decarboxylase E1 beta subunit (.1) Lus10010324 [exp] 210 / 3e-65 AT1G55510 619 / 0.0 branched-chain alpha-keto acid decarboxylase E1 beta subunit (.1) Lus10039361 [exp] 150 / 2e-45 AT5G50850 135 / 9e-40 MACCI-BOU, Transketolase family protein (.1) Lus10008084 [exp] 73 / 8e-14 AT5G11380 960 / 0.0 1-deoxy-D-xylulose 5-phosphate synthase 3 (.1.2) Lus10013117 [exp] 72 / 9e-14 AT5G11380 958 / 0.0 1-deoxy-D-xylulose 5-phosphate synthase 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G061400 [exp] 643 / 0 AT5G50850 640 / 0.0 MACCI-BOU, Transketolase family protein (.1) Potri.003G166400 [exp] 637 / 0 AT5G50850 636 / 0.0 MACCI-BOU, Transketolase family protein (.1) Potri.017G076500 [exp] 278 / 3e-91 AT2G34590 671 / 0.0 Transketolase family protein (.1) Potri.004G129800 [exp] 274 / 1e-89 AT2G34590 634 / 0.0 Transketolase family protein (.1) Potri.003G222800 [exp] 212 / 4e-66 AT1G55510 632 / 0.0 branched-chain alpha-keto acid decarboxylase E1 beta subunit (.1) Potri.007G058500 [exp] 70 / 4e-13 AT4G15560 999 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Potri.006G249700 [exp] 69 / 8e-13 AT5G11380 949 / 0.0 1-deoxy-D-xylulose 5-phosphate synthase 3 (.1.2) Potri.006G171700 [exp] 68 / 3e-12 AT4G15560 1037 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Potri.008G196500 [exp] 63 / 1e-10 AT4G15560 1207 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Potri.010G015200 [exp] 59 / 2e-09 AT4G15560 1227 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0254 [flax] [poplar] THDP-binding PF02779 [flax] [poplar] Transket_pyr Transketolase, pyrimidine binding domain CL0591 [flax] [poplar] TKC_like PF02780 [flax] [poplar] Transketolase_C Transketolase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10032550 pacid=23146253 polypeptide=Lus10032550 locus=Lus10032550.g ID=Lus10032550.BGIv1.0 annot-version=v1.0 ATGAATGTGAGGGAAGCTCTCAATTCTGCTATCGATGAAGAAATGTCTGCAGATCCAAAAGTCTTTTTGATGGGAGAGGAGGTTGGAGAATATCAAGGCG CATACAAGATTACTAAAGGTCTCTTGGAGAAGTATGGTCCTGACAGAGTCCTTGATACTCCAATTACCGAGGCTGGATTTACTGGTATTGGAGTTGGCGC AGCTTATCATGGGCTTAAGCCTATTGTTGAATTCATGACATTCAACTTCTCCATGCAGGCTATTGATCATATCATCAATTCTGCTGCAAAATCAAACTAC ATGTCTGCTGGTCAGATTTCTGTACCTATAGTTTTCAGGGGACCAAATGGTGCAGCTGCTGGAGTCGGTGCCCAGCATTCACATTGCTATGCAGCGTGGT ATGCTTCCTGCCCTGGTCTGAAGGTCCTTGCTCCTTATTCATCAGAAGATGCTCGGGTTCTTATGAAGGCTGCCATAAGAGACCCAGATCCAGTTGTCTT CCTGGAAAATGAGCTCTTGTATGGTGAGTCTTTTCCAGTTTCAGAAGAAGTTCTTGATTCTAGTTTCTGTCTTCCCATAGGAAAAGCTAAGGTTGAAAGA GAAGGCAAGGACGTAACCATCACTGCTTTCTCAAAGATGGTTGGTTATGCTCTCAAGGCTGCTGATATTCTTGCAAAAGAAGGAATAAGTGCCGAGGTCA TAAATCTTCGATCTATTCGTCCGCTTGATCGATCCACAATCAACAACTCTGTCAGAAAAACTAACAGACTCGTGACGGTCGAAGAAGGATTCCCTCAGCA TGGAATTGGTGCTGAGATATGTGCATCAGTCGTTGAGGAGAGCTTTGGATATCTTGATGCGCCCATTGAGAGGATTGCTGGAGCAGACGTTCCGATGCCT TACGCAGCAAACCTAGAGAGATTGGCTGTCCCTCAGGTTGAAGATATTGTTCGTGCTGCTAAGAGGACTTGCTACAGATCAGCAGCATAG
AA sequence Show only first row Show all	>Lus10032550 pacid=23146253 polypeptide=Lus10032550 locus=Lus10032550.g ID=Lus10032550.BGIv1.0 annot-version=v1.0 MNVREALNSAIDEEMSADPKVFLMGEEVGEYQGAYKITKGLLEKYGPDRVLDTPITEAGFTGIGVGAAYHGLKPIVEFMTFNFSMQAIDHIINSAAKSNY MSAGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASCPGLKVLAPYSSEDARVLMKAAIRDPDPVVFLENELLYGESFPVSEEVLDSSFCLPIGKAKVER EGKDVTITAFSKMVGYALKAADILAKEGISAEVINLRSIRPLDRSTINNSVRKTNRLVTVEEGFPQHGIGAEICASVVEESFGYLDAPIERIAGADVPMP YAANLERLAVPQVEDIVRAAKRTCYRSAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50850		MAB1	MACCI-BOU, Transketolase famil...		Lus10032550 [exp]	0	1
AT1G24450		NFD2	NUCLEAR FUSION DEFECTIVE 2, Ri...		Lus10002362 [exp]	4.1	0.8728
AT1G18640		PSP	3-phosphoserine phosphatase (....		Lus10034686 [exp]	6.9	0.8269
AT1G79660			unknown protein		Lus10024088 [exp]	8.3	0.8477
AT1G19360		RRA3	reduced residual arabinose 3, ...		Lus10032710 [exp]	8.7	0.8453
AT1G56590		ZIP4	ZIG SUPPRESSOR 4, Clathrin ada...		Lus10031432 [exp]	12.6	0.8103
AT2G42500		PP2A-3, PP2A-4	protein phosphatase 2A-3 (.1.2...		Lus10013754 [exp]	12.8	0.8173
AT1G50370		AtFYPP1	flower- specific, phytochrome-...		Lus10041012 [exp]	13.3	0.7657
AT4G02080		ASAR1, ATSARA1C...	secretion-associated RAS super...		Lus10031408 [exp]	13.3	0.8514
AT2G39630			Nucleotide-diphospho-sugar tra...		Lus10040296 [exp]	13.4	0.8077
AT3G51390			DHHC-type zinc finger family p...		Lus10028384 [exp]	16.5	0.8147

Compare expression of checked genes

Lus10032550 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.