Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48770 144 / 2e-37 DNA binding;ATP binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004567 [exp] 241 / 1e-70 AT3G48770 1691 / 0.0 DNA binding;ATP binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G103700 [exp] 190 / 4e-53 AT3G48770 1783 / 0.0 DNA binding;ATP binding (.1) Potri.015G103100 [exp] 170 / 2e-46 AT3G48770 1796 / 0.0 DNA binding;ATP binding (.1) Potri.015G102700 [exp] 165 / 1e-44 AT3G48770 1842 / 0.0 DNA binding;ATP binding (.1) Potri.015G102200 [exp] 164 / 4e-44 AT3G48770 1833 / 0.0 DNA binding;ATP binding (.1) Potri.015G103000 [exp] 155 / 4e-41 AT3G48770 1719 / 0.0 DNA binding;ATP binding (.1) Potri.015G102301 [exp] 134 / 1e-34 AT3G48770 389 / 1e-120 DNA binding;ATP binding (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032551 pacid=23146297 polypeptide=Lus10032551 locus=Lus10032551.g ID=Lus10032551.BGIv1.0 annot-version=v1.0 ATGTCTTACAAGGAAGAGCTTAAAAAACTTGGAGTGAAGGTAGATTTTGAGGATGCTACCAAAGCTTTTCTTCGCACTTTTAAACAGCAGGTGTCTGTGT CAAAGATGACGAAGGAACATGTTCTTTCTTTTCTGTCATGCTACAGACAGTTGAAGAAACTTGCGAAACCTCTTGGTGAGATTAAAAAATGCATGCGATC AGAGAAGTGGCTCCGAACAAGGATGGGTGATTACAGATCTCCAGCCGATTGCATTCTATTCGGTCCGGACTGGAAATCTCTTCGTGCAGTTACTTGCCTT CCTTTCCTTGATGATAGTGACAATGGCTATGGAACGGGCATTCACCAGTATGCAGCTGAGCTCAAGCTGATGGGAGTAGTTTCTGGCTTGCAAGATGGGG CAAAGGCTCCAAAAGATTGCTGCTTGTTTGATTCCAGTTGGGAGACAGATTTGAAGCCGGCTGATGGACCTTTCATTGATGAATCCTTTTTTGGTCCCAA AATTTCATCATACGCGAAAGAACTCAGTAAGCTAGGAGTTCGCATTGATGCAGCTGAACTCCCTGTTGTTTCATCTGGCGAAATTGTAATTTCTGACCAG CGCGATGTGTTCATAGCTGACGATCTTATTCTGAAGCGGAGCATCCGATATTTGTTTGGTATCCTCAACCAAACCTGCCTTACCTTTCCCGGACTAAGTT GCTGGGAAGTTTACAGGGGGATCGGAGTTCGTGGGATATCTGAGTCGGTACAGAAAGAAGAGAATTCAATAGACGGTAGCAATCAGCAGGCGTTCAAACA GGTGAATCCAGAAAACGTTTTCGTGGGGAAAGAGCTAGCTAAGATCATACTAGGGTTCCTAGCTGATCCCTCACTTAAAATGGATGGAAGCAAGTCGATG AGGTGTGATTTGCAGAAGGGTATGATTGAATATGCTTGCCGTTTTGCAGAAATAATAGCTAAAGGTGTGCTGTGGGAGAAAAAGGATCATATTATAACCG CACTCTCCGGTAGAATCAGACTGGGGTGTCTGGTAAAATTTGATGAAGCAGCAGTTGATTCCCTGTTGAAGGCCAATAATCTTCAGATCTTTATGGAAGA CGAGTTCCTCTCTTCCGCCTTTCCTTCCACTTAG
AA sequence Show only first row Show all	>Lus10032551 pacid=23146297 polypeptide=Lus10032551 locus=Lus10032551.g ID=Lus10032551.BGIv1.0 annot-version=v1.0 MSYKEELKKLGVKVDFEDATKAFLRTFKQQVSVSKMTKEHVLSFLSCYRQLKKLAKPLGEIKKCMRSEKWLRTRMGDYRSPADCILFGPDWKSLRAVTCL PFLDDSDNGYGTGIHQYAAELKLMGVVSGLQDGAKAPKDCCLFDSSWETDLKPADGPFIDESFFGPKISSYAKELSKLGVRIDAAELPVVSSGEIVISDQ RDVFIADDLILKRSIRYLFGILNQTCLTFPGLSCWEVYRGIGVRGISESVQKEENSIDGSNQQAFKQVNPENVFVGKELAKIILGFLADPSLKMDGSKSM RCDLQKGMIEYACRFAEIIAKGVLWEKKDHIITALSGRIRLGCLVKFDEAAVDSLLKANNLQIFMEDEFLSSAFPST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48770			DNA binding;ATP binding (.1)		Lus10032551 [exp]	0	1
AT5G12460			Protein of unknown function (D...		Lus10003179 [exp]	4.0	1.0000
AT1G18720			Protein of unknown function (D...		Lus10001647 [exp]	4.1	1.0000
					Lus10003763 [exp]	4.9	1.0000
					Lus10006079 [exp]	7.5	1.0000
					Lus10010414 [exp]	8.1	1.0000
AT2G22620			Rhamnogalacturonate lyase fami...		Lus10010628 [exp]	8.8	1.0000
					Lus10010663 [exp]	9.2	1.0000
AT4G28780			GDSL-like Lipase/Acylhydrolase...		Lus10023578 [exp]	10.6	1.0000
					Lus10034359 [exp]	11.0	1.0000
AT1G15780			unknown protein		Lus10023978 [exp]	11.2	1.0000

Compare expression of checked genes

Lus10032551 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.