Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50790 273 / 2e-91 SWEET10, AtSWEET10 Nodulin MtN3 family protein (.1) AT5G23660 237 / 3e-77 MTN3, SWEET12, AtSWEET12 homolog of Medicago truncatula MTN3 (.1) AT3G48740 236 / 5e-77 SWEET11, AtSWEET11 Nodulin MtN3 family protein (.1) AT5G50800 226 / 6e-73 SWEET13, AtSWEET13 Nodulin MtN3 family protein (.1) AT5G13170 224 / 2e-72 SAG29, SWEET15, AtSWEET15 senescence-associated gene 29 (.1) AT4G25010 219 / 2e-70 SWEET14, AtSWEET14 Nodulin MtN3 family protein (.1) AT2G39060 196 / 1e-61 SWEET9, AtSWEET9 Nodulin MtN3 family protein (.1) AT1G21460 141 / 2e-40 SWEET1, AtSWEET1 Nodulin MtN3 family protein (.1) AT4G15920 141 / 2e-40 SWEET17, AtSWEET17 Nodulin MtN3 family protein (.1) AT5G62850 131 / 9e-37 ATVEX1, SWEET5, AtSWEET5 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043190 [exp] 422 / 2e-150 AT5G13170 204 / 5e-65 senescence-associated gene 29 (.1) Lus10016742 [exp] 417 / 4e-148 AT5G50790 291 / 2e-98 Nodulin MtN3 family protein (.1) Lus10022436 [exp] 413 / 4e-146 AT5G50790 285 / 5e-96 Nodulin MtN3 family protein (.1) Lus10024770 [exp] 237 / 5e-77 AT5G23660 259 / 4e-86 homolog of Medicago truncatula MTN3 (.1) Lus10009782 [exp] 234 / 5e-76 AT5G23660 261 / 8e-87 homolog of Medicago truncatula MTN3 (.1) Lus10008861 [exp] 226 / 3e-73 AT5G50790 246 / 1e-81 Nodulin MtN3 family protein (.1) Lus10023249 [exp] 224 / 2e-72 AT5G50790 246 / 2e-81 Nodulin MtN3 family protein (.1) Lus10015754 [exp] 219 / 5e-70 AT5G13170 289 / 7e-98 senescence-associated gene 29 (.1) Lus10000310 [exp] 217 / 3e-69 AT5G13170 295 / 3e-100 senescence-associated gene 29 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G101500 [exp] 320 / 8e-110 AT5G50790 291 / 6e-99 Nodulin MtN3 family protein (.1) Potri.015G101400 [exp] 318 / 3e-109 AT5G50790 276 / 7e-93 Nodulin MtN3 family protein (.1) Potri.015G101600 [exp] 313 / 3e-107 AT5G50790 276 / 1e-92 Nodulin MtN3 family protein (.1) Potri.012G103200 [exp] 306 / 2e-104 AT5G50790 230 / 1e-74 Nodulin MtN3 family protein (.1) Potri.003G166800 [exp] 241 / 9e-79 AT5G13170 290 / 3e-98 senescence-associated gene 29 (.1) Potri.015G101700 [exp] 234 / 4e-76 AT5G23660 312 / 3e-107 homolog of Medicago truncatula MTN3 (.1) Potri.001G060900 [exp] 224 / 3e-72 AT5G13170 294 / 9e-100 senescence-associated gene 29 (.1) Potri.019G030500 [exp] 212 / 7e-68 AT2G39060 272 / 3e-92 Nodulin MtN3 family protein (.1) Potri.013G013800 [exp] 160 / 5e-47 AT4G15920 214 / 3e-69 Nodulin MtN3 family protein (.1) Potri.013G013900 [exp] 157 / 1e-45 AT4G15920 205 / 4e-65 Nodulin MtN3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0141 [flax] [poplar] MtN3-like PF03083 [flax] [poplar] MtN3_slv Sugar efflux transporter for intercellular exchange
Representative CDS sequence Show only first row Show all	>Lus10032553 pacid=23146299 polypeptide=Lus10032553 locus=Lus10032553.g ID=Lus10032553.BGIv1.0 annot-version=v1.0 ATGGCAGTCCACTTCTCTCTCGTGTTCCTCTTCGGGCTTCTCGGGAACGCAATCTCGTGCTTCGTTTGCTTGGCTCCAATGCCCACCTTCTACCAGATTT GGAAGAAGAAGACCAGCGAAGGATACCAGTCCATCCCTTACGTCATCGGACTCTTCAGCGCCATGCTTTGGCTCTTCTACGCCATGTTCGCTAAAGACGC CATGCTCCTCATCACCATCAACGTCTTCACCTTCATCATGCAGACCTTCTACATTACCATCTACCTCCTCTACTCCAACAAATCCGACAGGCGGACTACG ATAAAGCTGCTGAGCTTCTTCAACCTGATTGGATTCGGAGTGATCTGCACGGTGTGCATGGCGTTTACCCACGGCCAACTTCGAGTCAAGGTCCTCGGTT GGATTTGCATGGTCTTCTCCCTATGTGTTTTCGTCGCCCCTCTTGGCATCGTGAGGAAAGTGATCAAAACCAAGAGCGTGGAGTTCATGCCGATCTCCCT CTCCTTCTTCCTCACCCTCAGCGCCGTCATGTGGTTCATGTACGGTTTCCTCAAGAAAGACCCTTACGTCGCTGTTCCGAACATTCTGGGGTTGACCTTC GGGATCCTGCAGATGGTGCTCTACCTAATCTACCGTAAGACAACTCCTGCTCCCGCAAGCAAGAAGGCGGCGGAGATCAAGGAGGTGGGGCCAGCACAAG TACAGGTGGTGATCGACGTGGCAAAGCTGGGAGGAGAGCAGCCGAACAAGCAAGTGATACCAGTTAACACGGCCGCCGCTGTCCCTCAGGAGCTGATCAT CGAACTGATTAACGTTGTTGCCGCGGCGGAGGAGGAAGAGGCCGAACGCGTCAAGCATATGAACAGCAAGAAAGACACCGTGATACGCAGCCCCGCCATT GCAGTTGCATGA
AA sequence Show only first row Show all	>Lus10032553 pacid=23146299 polypeptide=Lus10032553 locus=Lus10032553.g ID=Lus10032553.BGIv1.0 annot-version=v1.0 MAVHFSLVFLFGLLGNAISCFVCLAPMPTFYQIWKKKTSEGYQSIPYVIGLFSAMLWLFYAMFAKDAMLLITINVFTFIMQTFYITIYLLYSNKSDRRTT IKLLSFFNLIGFGVICTVCMAFTHGQLRVKVLGWICMVFSLCVFVAPLGIVRKVIKTKSVEFMPISLSFFLTLSAVMWFMYGFLKKDPYVAVPNILGLTF GILQMVLYLIYRKTTPAPASKKAAEIKEVGPAQVQVVIDVAKLGGEQPNKQVIPVNTAAAVPQELIIELINVVAAAEEEEAERVKHMNSKKDTVIRSPAI AVA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50790		SWEET10, AtSWEE...	Nodulin MtN3 family protein (....		Lus10032553 [exp]	0	1
AT4G01650			Polyketide cyclase / dehydrase...		Lus10007203 [exp]	4.9	0.8774
AT4G03140			NAD(P)-binding Rossmann-fold s...		Lus10016179 [exp]	7.7	0.8196
AT3G22830	HSF	AT-HSFA6B	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10000049 [exp]	8.9	0.8817
AT3G22830	HSF	AT-HSFA6B	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10039376 [exp]	13.3	0.8925
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10024369 [exp]	16.1	0.8389
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Lus10027469 [exp]	19.1	0.8453
AT5G66440			unknown protein		Lus10041775 [exp]	24.2	0.8622
AT1G20870			HSP20-like chaperones superfam...		Lus10013203 [exp]	27.5	0.8340
AT5G51520			Plant invertase/pectin methyle...		Lus10031712 [exp]	28.8	0.8548
AT1G76880	Trihelix		Duplicated homeodomain-like su...		Lus10028582 [exp]	29.7	0.8545

Compare expression of checked genes

Lus10032553 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.