Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41040 639 / 0 HXXXD-type acyl-transferase family protein (.1.2) AT5G63560 548 / 0 HXXXD-type acyl-transferase family protein (.1) AT3G48720 526 / 0 DCF DEFICIENT IN CUTIN FERULATE, HXXXD-type acyl-transferase family protein (.1) AT1G03390 249 / 5e-78 HXXXD-type acyl-transferase family protein (.1) AT5G48930 247 / 2e-77 HCT hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) AT1G27620 241 / 6e-75 HXXXD-type acyl-transferase family protein (.1) AT1G65450 232 / 2e-71 HXXXD-type acyl-transferase family protein (.1.2.3) AT3G03480 213 / 7e-64 CHAT acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase (.1) AT5G17540 204 / 1e-60 HXXXD-type acyl-transferase family protein (.1) AT5G57840 202 / 6e-60 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043189 [exp] 880 / 0 AT5G41040 635 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10012552 [exp] 612 / 0 AT5G41040 642 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10035189 [exp] 429 / 2e-148 AT5G41040 440 / 2e-152 HXXXD-type acyl-transferase family protein (.1.2) Lus10032020 [exp] 430 / 1e-146 AT5G41040 443 / 2e-151 HXXXD-type acyl-transferase family protein (.1.2) Lus10032019 [exp] 425 / 1e-146 AT5G41040 446 / 1e-154 HXXXD-type acyl-transferase family protein (.1.2) Lus10035190 [exp] 417 / 2e-143 AT5G41040 419 / 5e-144 HXXXD-type acyl-transferase family protein (.1.2) Lus10025523 [exp] 413 / 5e-142 AT5G41040 406 / 3e-139 HXXXD-type acyl-transferase family protein (.1.2) Lus10039329 [exp] 412 / 3e-141 AT5G41040 398 / 5e-136 HXXXD-type acyl-transferase family protein (.1.2) Lus10005439 [exp] 365 / 4e-123 AT5G41040 364 / 2e-122 HXXXD-type acyl-transferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G100800 [exp] 692 / 0 AT5G41040 644 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.001G326300 [exp] 664 / 0 AT5G41040 677 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.017G068500 [exp] 553 / 0 AT5G41040 583 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.014G166600 [exp] 379 / 8e-129 AT5G41040 394 / 2e-134 HXXXD-type acyl-transferase family protein (.1.2) Potri.019G003000 [exp] 268 / 2e-85 AT5G17540 480 / 9e-168 HXXXD-type acyl-transferase family protein (.1) Potri.019G002900 [exp] 267 / 8e-85 AT5G17540 481 / 5e-168 HXXXD-type acyl-transferase family protein (.1) Potri.001G447700 [exp] 263 / 2e-83 AT5G17540 383 / 1e-129 HXXXD-type acyl-transferase family protein (.1) Potri.002G032200 [exp] 262 / 7e-83 AT1G27620 614 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.019G043600 [exp] 259 / 8e-82 AT5G17540 545 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.013G074500 [exp] 259 / 1e-81 AT5G17540 547 / 0.0 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10032554 pacid=23146415 polypeptide=Lus10032554 locus=Lus10032554.g ID=Lus10032554.BGIv1.0 annot-version=v1.0 ATGGCTGATCTTGAAGCTCCAACCCAAGTAGCACTGAACGTCACCCGCAAAGAGCCCACTCTGGTTCCACCAGCAGAGGACACCGACAAAGGCTTCTACT TTCTGTCCAACCTGGACCAGAACATCGCCGTCATAGTCCGTACCATCTACTGCTTCAAGTCCGAAAACAGGGGAAACGACGATGCCGCCGAGGTCATCAA GGATGCGCTTTCCAAAGTCCTTGTACACTACTACCCTTTGGCCGGACGACTCACTCTGACCCCCGACATGAAGCTCATCGTCGACTGCTCTGGCGGCGCT GATCAAGGTGCTGTCTTTGTGGAGGCGGACGCGGATTGCGACGTTTCGGGGATTGGAGACATCACTAAGCCTGATCCTGTCTCTCTTGGGAAGCTCGTCT ATGACATTCCTGGTGCTCAGAACATTCTCCAGATCCCACCTCTCGTTGTTCAGGTCACAAGGTTCAAGTGTGGAGGGTTCGTGATCGGACTATGCATGAA CCACTGCATGTTCGACGGAATCGGAGCCATGGAGTTCGTCAACTCATGGGGCGAAACCGCCAGAGGAAAGCCACTAAACGTCCCACCGTTCCTCGACAGA ACAATCCTCAAAGCCCGAATCCCACCGCAAATCGACAACCCGCACCACGAATTCGCCCAAATCGAAGACCTATCCAACATAGCAAAACTCTATGAGGAGG AAGACATGCTTTACAGGTCATTCTGCTTCGACCCTGAAAAACTCCAGCGCGTGAAGTCCAAAGCGCTCGAAGACGCGTCACTACCGAAATGCACAACTTT CGAGGCCCTCTCCGCATTCGTATGGAAATGCAGGACGCAGGCGTTGAATCTGCTGCCACATCAGCAGACCAAGCTGTTATTTGCCGTGGACGGCAGGGGT AGATTCGTCCCTCCAATCCCTCAGGGGTATTTCGGGAACGCGATCGTGCTCACGAACTCGCTCTGCGAAGCAGGGGAGATCGTCGAAAACGACCTGTCGT TTGCGGTGAAGCGAGTCCAGGAAGCGGTTAAGATGGTCGACGACGGTTATATGAGATCGGCAATTGACTATTTTGAGACGACGAGGGCTAGGCCGTCGCT TGCAGCTACGCTTCTGATCACTACTTGGTCGAGGTTGTCGTTTCACACTACGGATTTCGGGTGGGGGGAGCCGACGGTTTCGGGGCCGGTGGCTCTGCCG GAGAAGGAAGTGATTCTGTTCCTTTCTCACGGGAAAGAAAGGAAGAGCGTGAATGTGCTTCTGGGTCTTCCGTCTTCTGCTATGAAAACTTTTGAAGGAC TCATATGGGAATGA
AA sequence Show only first row Show all	>Lus10032554 pacid=23146415 polypeptide=Lus10032554 locus=Lus10032554.g ID=Lus10032554.BGIv1.0 annot-version=v1.0 MADLEAPTQVALNVTRKEPTLVPPAEDTDKGFYFLSNLDQNIAVIVRTIYCFKSENRGNDDAAEVIKDALSKVLVHYYPLAGRLTLTPDMKLIVDCSGGA DQGAVFVEADADCDVSGIGDITKPDPVSLGKLVYDIPGAQNILQIPPLVVQVTRFKCGGFVIGLCMNHCMFDGIGAMEFVNSWGETARGKPLNVPPFLDR TILKARIPPQIDNPHHEFAQIEDLSNIAKLYEEEDMLYRSFCFDPEKLQRVKSKALEDASLPKCTTFEALSAFVWKCRTQALNLLPHQQTKLLFAVDGRG RFVPPIPQGYFGNAIVLTNSLCEAGEIVENDLSFAVKRVQEAVKMVDDGYMRSAIDYFETTRARPSLAATLLITTWSRLSFHTTDFGWGEPTVSGPVALP EKEVILFLSHGKERKSVNVLLGLPSSAMKTFEGLIWE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41040			HXXXD-type acyl-transferase fa...		Lus10032554 [exp]	0	1
AT1G05450			Bifunctional inhibitor/lipid-t...		Lus10041196 [exp]	1.0	0.9865
AT3G22600			Bifunctional inhibitor/lipid-t...		Lus10022066 [exp]	2.0	0.9825
					Lus10018643 [exp]	2.8	0.9763
AT4G24130			Protein of unknown function, D...		Lus10017330 [exp]	3.0	0.9779
AT5G13580		ABCG6	ATP-binding cassette G6, ABC-2...		Lus10030306 [exp]	3.5	0.9718
AT5G07475			Cupredoxin superfamily protein...		Lus10012085 [exp]	4.5	0.9758
AT1G28490		OSM1, ATSYP61, ...	syntaxin of plants 61 (.1.2)		Lus10039880 [exp]	5.2	0.9649
AT1G05450			Bifunctional inhibitor/lipid-t...		Lus10021911 [exp]	5.3	0.9687
AT2G37360		ABCG2	ATP-binding cassette G2, ABC-2...		Lus10030307 [exp]	6.2	0.9478
AT3G22600			Bifunctional inhibitor/lipid-t...		Lus10014681 [exp]	6.6	0.9645

Compare expression of checked genes

Lus10032554 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.