Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26860 377 / 6e-134 Predicted pyridoxal phosphate-dependent enzyme, YBL036C type (.1.2) AT1G11930 341 / 1e-119 Predicted pyridoxal phosphate-dependent enzyme, YBL036C type (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020039 [exp] 316 / 2e-108 AT1G11930 372 / 2e-130 Predicted pyridoxal phosphate-dependent enzyme, YBL036C type (.1.2) Lus10015557 [exp] 311 / 2e-108 AT1G11930 361 / 6e-128 Predicted pyridoxal phosphate-dependent enzyme, YBL036C type (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G006600 [exp] 337 / 2e-117 AT1G11930 417 / 5e-149 Predicted pyridoxal phosphate-dependent enzyme, YBL036C type (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF01168 [flax] [poplar] Ala_racemase_N Alanine racemase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10032558 pacid=23146224 polypeptide=Lus10032558 locus=Lus10032558.g ID=Lus10032558.BGIv1.0 annot-version=v1.0 ATGGCTGCTCCTGCCGCCGCTATAGAGGCCGGAGTCGTAACGGCTGCCTTCCGATCAGTCCTGCTCCGCGCCCGCCAAGCCGCTGAAAGAGCAGGAACCA GCCCCGACCGAGTACGGGTCGTCCCCGTCTCCAAAACTAAACCCGCTTCCCTTATCCGCGAGCTCTACGACGCTGGCCATCGCCGCTTCGGCGAGAACTA CGTTCAGGAGATCGTCGATAAAGCTCCACAGCTGCCGGATGATATCGAGTGGCATTTTATTGGTCACTTGCAAAGCAATAAAGTGAAAACGCTTCTGAAT GGAGTCCCAAATTTGAATACTGTTGAGGGTGTTGATAATTTGAAGGTAGCAACTATTCTTGACAAAGTGGTTTCAAGCCTTGGAAGAAACCCTTTGAATG TCATGGTCCAGGTGAATACCAGTGGTGAAGCATCAAAATCTGGCATTGACCCGGCTGGGTGCCTAGGGCTGGCAGAGCATATAAAACTGCATTGCCCAAA TTTGGCTCTTTCTGGCTTTATGACCATTGGGATGCCGGACTACACATCAACGCCTGAAAACTTTAGGACATTACTAAACTGTAGACTTGAGGTGTGCAAG GCATTTGGAACGACTGAGGACCAGTATGAGCTCTCGATGGGAATGTCCGGGGACTTTGAGCAAGCTATTGAAATGGGTAGTACCAGTGTCAGAGTGGGAT CAACCATTTTCGGGCCAAGGGAGTATGCAAAGAAGACTTGA
AA sequence Show only first row Show all	>Lus10032558 pacid=23146224 polypeptide=Lus10032558 locus=Lus10032558.g ID=Lus10032558.BGIv1.0 annot-version=v1.0 MAAPAAAIEAGVVTAAFRSVLLRARQAAERAGTSPDRVRVVPVSKTKPASLIRELYDAGHRRFGENYVQEIVDKAPQLPDDIEWHFIGHLQSNKVKTLLN GVPNLNTVEGVDNLKVATILDKVVSSLGRNPLNVMVQVNTSGEASKSGIDPAGCLGLAEHIKLHCPNLALSGFMTIGMPDYTSTPENFRTLLNCRLEVCK AFGTTEDQYELSMGMSGDFEQAIEMGSTSVRVGSTIFGPREYAKKT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26860			Predicted pyridoxal phosphate-...		Lus10032558 [exp]	0	1
AT4G28030			Acyl-CoA N-acyltransferases (N...		Lus10019975 [exp]	1.0	0.9201
AT1G34000		OHP2	one-helix protein 2 (.1)		Lus10017779 [exp]	3.5	0.8807
AT3G26070			Plastid-lipid associated prote...		Lus10020982 [exp]	4.7	0.9113
AT1G15140			FAD/NAD(P)-binding oxidoreduct...		Lus10007954 [exp]	5.3	0.8979
AT1G71950			Proteinase inhibitor, propepti...		Lus10025848 [exp]	6.8	0.8612
AT4G38225			unknown protein		Lus10013843 [exp]	7.1	0.9107
AT5G19590			Protein of unknown function, D...		Lus10017733 [exp]	9.2	0.8516
AT4G14450		ATBET12	unknown protein		Lus10021878 [exp]	10.0	0.9049
AT2G36835			unknown protein		Lus10014416 [exp]	10.7	0.8652
AT4G14450		ATBET12	unknown protein		Lus10022200 [exp]	12.2	0.8319

Compare expression of checked genes

Lus10032558 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.