Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020006 [exp] 82 / 4e-19 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G087000 [exp] 89 / 6e-22 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05553 [flax] [poplar] DUF761 Cotton fibre expressed protein
Representative CDS sequence Show only first row Show all	>Lus10032559 pacid=23146354 polypeptide=Lus10032559 locus=Lus10032559.g ID=Lus10032559.BGIv1.0 annot-version=v1.0 ATGAAGATGAAGAACAACAAGAGTGATCAGATTCTGATGGTTGTGATAATGGCAACACTCCTCATCGTTGCCCCTCTGATTCCCTGCTCCTTAAGGCCTA AATATCTTTACTTCATCTTCAACCTTCTCATCATAGCTCTTGCTGCTGAAGCTGGCCTTCTTCCTACTCTCTCTAACAAAAACAATAACAATATCAAGCA GCCGACCTCTGCAGTTTCCCCTGCAGCAAAACCACTTCAGGATGCTACTAAGAAAGTGGAGATATTCCCATCCGGGGAAGTTATTAGTAGCAGTTCAACA GAAAAGGTTACTAAGAACAAGCGTCTTTGTTCGGATACACCGAGCTTGTTCTTTATAGGAGATGACGGGGAGGAAGATCATTATGTGAAAGATGATGATG GGATTGATCATGAGTTAGCTGAAGGAGAAGATGATGATGATGATGATGTTTCTGTTGGCGAGATTAATGATGAGGAGCTGTTCACTAAAGCTGAGACATT CATAGGCAACTTCTACAACCAGTTGAAGATGCAGAGGGACATGGGGTTTATGGCAAATGATAGTATCCAATATCGCCACTCCATGGCCATGGCTTAA
AA sequence Show only first row Show all	>Lus10032559 pacid=23146354 polypeptide=Lus10032559 locus=Lus10032559.g ID=Lus10032559.BGIv1.0 annot-version=v1.0 MKMKNNKSDQILMVVIMATLLIVAPLIPCSLRPKYLYFIFNLLIIALAAEAGLLPTLSNKNNNNIKQPTSAVSPAAKPLQDATKKVEIFPSGEVISSSST EKVTKNKRLCSDTPSLFFIGDDGEEDHYVKDDDGIDHELAEGEDDDDDDVSVGEINDEELFTKAETFIGNFYNQLKMQRDMGFMANDSIQYRHSMAMA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10032559 [exp]	0	1
AT2G38280		ATAMPD, FAC1	EMBRYONIC FACTOR1, ADENOSINE 5...		Lus10003378 [exp]	1.0	0.9065
AT2G40390			unknown protein		Lus10010225 [exp]	1.4	0.8947
AT1G14790		ATRDRP1, RDR1	RNA-dependent RNA polymerase 1...		Lus10019164 [exp]	1.7	0.8554
AT1G27320		AHK3	histidine kinase 3 (.1)		Lus10037032 [exp]	3.9	0.8439
AT2G30800		ATVT-1, HVT1	helicase in vascular tissue an...		Lus10020727 [exp]	6.6	0.8447
AT5G44005			unknown protein		Lus10003608 [exp]	7.9	0.8346
AT1G19715			Mannose-binding lectin superfa...		Lus10024291 [exp]	9.8	0.8237
AT1G30280			Chaperone DnaJ-domain superfam...		Lus10005923 [exp]	12.7	0.8399
AT1G27180			disease resistance protein (TI...		Lus10023093 [exp]	13.9	0.7870
AT5G15080			Protein kinase superfamily pro...		Lus10006643 [exp]	15.3	0.8178

Compare expression of checked genes

Lus10032559 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.