Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55180 613 / 0 O-Glycosyl hydrolases family 17 protein (.1.2) AT4G26830 597 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT2G05790 576 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT3G07320 342 / 2e-113 O-Glycosyl hydrolases family 17 protein (.1) AT5G56590 342 / 5e-113 O-Glycosyl hydrolases family 17 protein (.1) AT5G24318 334 / 9e-111 O-Glycosyl hydrolases family 17 protein (.1.2) AT2G01630 331 / 5e-109 O-Glycosyl hydrolases family 17 protein (.1.2) AT3G13560 331 / 7e-109 O-Glycosyl hydrolases family 17 protein (.1.2.3) AT2G16230 323 / 6e-106 O-Glycosyl hydrolases family 17 protein (.1) AT1G66250 323 / 7e-106 O-Glycosyl hydrolases family 17 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040600 [exp] 679 / 0 AT5G55180 630 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10018306 [exp] 676 / 0 AT5G55180 632 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10004391 [exp] 632 / 0 AT5G55180 602 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10015151 [exp] 564 / 0 AT2G05790 731 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10038211 [exp] 342 / 3e-113 AT3G07320 614 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10040461 [exp] 328 / 4e-108 AT2G16230 649 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10034607 [exp] 328 / 7e-108 AT2G01630 691 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10004962 [exp] 327 / 7e-108 AT5G24318 462 / 8e-161 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10013465 [exp] 328 / 2e-107 AT2G01630 745 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G094400 [exp] 639 / 0 AT5G55180 635 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.014G158400 [exp] 568 / 0 AT2G05790 751 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.002G224600 [exp] 566 / 0 AT2G05790 750 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.012G017800 [exp] 354 / 3e-118 AT5G24318 583 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.002G247900 [exp] 352 / 3e-117 AT3G07320 653 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.004G153800 [exp] 334 / 1e-110 AT4G34480 649 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.008G055900 [exp] 333 / 2e-110 AT3G55430 494 / 8e-174 O-Glycosyl hydrolases family 17 protein (.1) Potri.002G247800 [exp] 332 / 1e-109 AT3G07320 632 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.002G261800 [exp] 332 / 1e-109 AT2G16230 635 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.001G240000 [exp] 332 / 3e-109 AT5G24318 508 / 2e-178 O-Glycosyl hydrolases family 17 protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00332 [flax] [poplar] Glyco_hydro_17 Glycosyl hydrolases family 17 CL0058 [flax] [poplar] PF07983 [flax] [poplar] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Lus10032562 pacid=23146401 polypeptide=Lus10032562 locus=Lus10032562.g ID=Lus10032562.BGIv1.0 annot-version=v1.0 ATGGCTCCTTTCCTCTTCACTCTACTTTCCTCATTAATCCTTTCCCTATCCGCCGCCGGAGAAGGTGAAGGCTCAATCGGAGTCAACTACGGCAGAATCG CAGACAACCTACCTTCCCCTGCCCAAGTCGTCCAGCTTTTGAAATCTCAGGGGATCACCAAGGTCAAGCTCTTCGACACCAACTCCCAAGTCCTCGCCTC CCTTGCACACACCGCCATCGCCGTCACCGTCGCTCTCCCCAACGAGATGCTCGCCGACACCGCCGCTGATCAGTCCTTCGCCGACGACTGGGTCCGCGCC AACATCTCCAAGTTCTACCCGGCCACCAGAATCGAAGCCATCGCCGTCGGCAATGAAGTGTTCGTCGACCCCAAGAACACGACTCCACATCTGGTCCCGG CGATGAAGAATGTCCACAACGCGTTGCTCAAGTTCAACCTCACGGATATCAAGATCTCTTCCCCGATTGCTCTCAGCGCGCTGGAGAATTCGTACCCGGC TTCTTCCGGATCGTTCAAACCCGAATTGATCGAACCGGTGATTAAGCCGATGCTGAGCTTCCTCAACCAAACCGGTTCGTATCTTATGGTTAACGCCTAC CCGTTCTTCGCCTACGCGGCTAACGCAGACCAGATCCCGCTCGATTACGCTCTGTTTAAACCGAATTCGGGTTCGGTTGATACGGGTAATGGGCTGCAGT ACTCCAGTCTGATGGAGGCCCAACTCGACGCTGTTTTCGCTGCGATGTCGGCTGTCCAATACGGCGACGTAAAGATGGTTGTGACCGAGACGGGCTGGCC ATCACTCGGTGACTCGGACGAGGTGGGAGCGAGTCACGCCAATGCGCAGTCGTATAACGGGAACTTGGTCAACAGAGTTCTAACCGGGAAAGGAACGCCG TTGAGACCAAACGAGCCGTTGAATGTTTTCCTGTTCGCGTTGTTTAACGAGAACAAGAAGACCGGGCCCACGTCGGAGAGGAACTATGGGTTGTTCTACC CGAACCAGCAAAAGGTGTACGACATTACATTGAGCAGCACGACGACGCCGGCGGAAGGAGAGTCCAAGGGCTCGCCGGCGGCGAGTCAAGGCGGGGAGAC TTGGTGCGTGGCTAACGGGAAAGTCGGGGAGGAGAAGTTGAAAGCTGCGATGGAATACGCTTGTGGCGAAGGTGGCGCTGACTGCCGCCCGATCGAGGAA GGTGCCACGTGTTACGATCCGAACACGGTTGAGGCCCATGCCTCGTACGTGTTCAATAGCTATTATCAGAAGAAGCAGAGGAGAGCTGGGACGTGCCATT TCGGTGGGGCGGCTTATGTCGTCACTCAGCCTCCGAGTGCTGGAAAATGCGAGTACCCAACTGGATATTGA
AA sequence Show only first row Show all	>Lus10032562 pacid=23146401 polypeptide=Lus10032562 locus=Lus10032562.g ID=Lus10032562.BGIv1.0 annot-version=v1.0 MAPFLFTLLSSLILSLSAAGEGEGSIGVNYGRIADNLPSPAQVVQLLKSQGITKVKLFDTNSQVLASLAHTAIAVTVALPNEMLADTAADQSFADDWVRA NISKFYPATRIEAIAVGNEVFVDPKNTTPHLVPAMKNVHNALLKFNLTDIKISSPIALSALENSYPASSGSFKPELIEPVIKPMLSFLNQTGSYLMVNAY PFFAYAANADQIPLDYALFKPNSGSVDTGNGLQYSSLMEAQLDAVFAAMSAVQYGDVKMVVTETGWPSLGDSDEVGASHANAQSYNGNLVNRVLTGKGTP LRPNEPLNVFLFALFNENKKTGPTSERNYGLFYPNQQKVYDITLSSTTTPAEGESKGSPAASQGGETWCVANGKVGEEKLKAAMEYACGEGGADCRPIEE GATCYDPNTVEAHASYVFNSYYQKKQRRAGTCHFGGAAYVVTQPPSAGKCEYPTGY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55180			O-Glycosyl hydrolases family 1...		Lus10032562 [exp]	0	1
AT5G23860		TUB8, b-TUB	tubulin beta 8 (.1.2)		Lus10016448 [exp]	3.2	0.9171
AT3G60900		FLA10	FASCICLIN-like arabinogalactan...		Lus10038005 [exp]	3.5	0.8981
AT5G05940		ATROPGEF5, ROPG...	ROP guanine nucleotide exchang...		Lus10004676 [exp]	4.5	0.8925
AT2G45470		AGP8, FLA8	FASCICLIN-like arabinogalactan...		Lus10038004 [exp]	5.3	0.9015
AT4G28230			unknown protein		Lus10018539 [exp]	10.1	0.8998
AT1G03440			Leucine-rich repeat (LRR) fami...		Lus10027967 [exp]	11.7	0.8842
AT1G16340		ATKDSA2, ATKSDA	Aldolase superfamily protein (...		Lus10009596 [exp]	13.4	0.8676
AT1G08010	GATA	GATA11	GATA transcription factor 11 (...		Lus10021466 [exp]	17.0	0.8670
AT4G28230			unknown protein		Lus10039766 [exp]	18.3	0.8583
AT3G51740		IMK2	inflorescence meristem recepto...		Lus10012225 [exp]	18.7	0.8680

Compare expression of checked genes

Lus10032562 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.