Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20290 874 / 0 ATEHD1 EPS15 homology domain 1 (.1.2) AT4G05520 809 / 0 ATEHD2 EPS15 homology domain 2 (.1.2) AT1G21630 86 / 4e-17 Calcium-binding EF hand family protein (.1.2) AT1G20760 72 / 5e-13 Calcium-binding EF hand family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043181 [exp] 1026 / 0 AT3G20290 936 / 0.0 EPS15 homology domain 1 (.1.2) Lus10035983 [exp] 79 / 3e-15 AT1G21630 454 / 4e-147 Calcium-binding EF hand family protein (.1.2) Lus10016689 [exp] 79 / 4e-15 AT1G21630 806 / 0.0 Calcium-binding EF hand family protein (.1.2) Lus10016028 [exp] 79 / 6e-15 AT1G20760 770 / 0.0 Calcium-binding EF hand family protein (.1) Lus10012248 [exp] 78 / 1e-14 AT1G20760 886 / 0.0 Calcium-binding EF hand family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G356300 [exp] 889 / 0 AT3G20290 938 / 0.0 EPS15 homology domain 1 (.1.2) Potri.011G022300 [exp] 808 / 0 AT4G05520 876 / 0.0 EPS15 homology domain 2 (.1.2) Potri.002G008600 [exp] 81 / 8e-16 AT1G20760 825 / 0.0 Calcium-binding EF hand family protein (.1) Potri.005G253000 [exp] 81 / 1e-15 AT1G20760 629 / 0.0 Calcium-binding EF hand family protein (.1) Potri.005G102200 [exp] 78 / 1e-14 AT1G21630 887 / 0.0 Calcium-binding EF hand family protein (.1.2) Potri.007G063200 [exp] 78 / 1e-14 AT1G20760 669 / 0.0 Calcium-binding EF hand family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00350 [flax] [poplar] Dynamin_N Dynamin family
Representative CDS sequence Show only first row Show all	>Lus10032563 pacid=23146282 polypeptide=Lus10032563 locus=Lus10032563.g ID=Lus10032563.BGIv1.0 annot-version=v1.0 ATGGAGATTTCTCCCTCTCCAATCGGTTCCTGCAACAAAGAGTTCCAGAAGATCTACCAGGAGTGGTTCAGCTACGCCGATGCAGATGGAGATGGTAGAA TCACTGGTAATGATGCTATAAAGTTCTTCGGCATGTCGAATTTACCGCGCCCGGATCTTAAGCAGGTGTGGGCTATGGCTGACACCAAGAGGCAAGGATA CCTTGGTTTCAAAGAATTCGTCGCATCTATGCAGTTGGTTTCCTTGGCACAATCTGGGAAGGAGATATCAAATGATGTTATTCACAGCGATACTGTTGAT TTTGAGAATCTTCCTCCTCCCATGATGGAAGGTTTAGCCGAACTTTTGGCGAAGCAAAAGAGGTCTTCAAGATTAAGTGATGGTGATGCAAATGGTAGCC CTCCCCAAGAAACCTCACCGTCGGTACGTTGGTTTTCTTCATCAAAATCCGTAAAGAAGGTCTCTCTGTCCTCTGTGACATCCATTGTTGATGGTTTGAA GAAGTTGTATCTTCAAAAACTGAAGCCATTGGAAGTTGCTTATCGCTTCAATGACTTTGTATCTCCACTATTGACCAATAGTGATTTTGATTGCAAACCC ATGGTTATGCTATTGGGCCAGTACTCCACAGGGAAAACAACATTCATTAAACATTTACTTAAAACTAGCTATCCAGGGTCTCATATTGGACCTGAACCTA CCACAGACCGATTTGTTGTTGTTATGTCTGGACCAGATGAAAGAAGTATTCCTGGAAACACTGTTGCAGTTCAAGCAGACATGCCTTTTAGTGGCTTAAC AACTTTTGGAACTGCATTTTTGTCGAAATTCGAATGTTCCCAAATGCCGCATCCACTGCTGGAGCATATCACATTTGTGGACTCACCTGGAGTGTTATCT GGAGAAAAGCAACGAATTCACCGCTCTTATGATTTCACGGGCGTCACGTCATGGTTTGCTTCAAAGTGTGACCTTATTCTGCTTCTCTTCGATCCTCACA AACTTGATGTCAGTGATGAGTTCAAGCGTGTGATTGCATCTCTACGTGGACATGACGACAAGATTAGGGTTGTTCTTAACAAAGCAGACCAAGTGGATAC TCAACAACTAATGAGAGTCTATGGAGCCTTGATGTGGTCATTGGGAAAAGTTCTTAATACTCCTGAAGTTATGCGTGTCTATATAGGCTCATTCAACGAC AAACCAGTGAACGAAAATGCTGTTGGACCCCTTGGGAGAGAGCTTTTTGAGAAAGAACAGTCTGACCTTCTTGCAGATCTTAAAGATATACCCAAGAAGG CTTGTGATCGCAGAATCAACGAGTTTGTAAAACGCGCAAGGGCTGCAAAGATACATGCTTACATTATTAGCCACCTTAAGAAGGAGATGCCGTCCATGAT GGGAAAAGCAAAGGCTCAGCAAAGACTTATCGATAATTTGGCAGACGAATTTGGAAAGTTTCACTTACCACCAGGTGACTTCCCGAATGTAGAGCAGTTC AAGGAGGTTCTAAGCGGCTACAATATCGACAAGTTTGAAAAATTGAAGCCGAAAATGATCCAAGCTGTTGATGAAATGCTTGGGTACGACATCCCCGACC TATTGAAGAACTTCAGGAACCCATATGACTAA
AA sequence Show only first row Show all	>Lus10032563 pacid=23146282 polypeptide=Lus10032563 locus=Lus10032563.g ID=Lus10032563.BGIv1.0 annot-version=v1.0 MEISPSPIGSCNKEFQKIYQEWFSYADADGDGRITGNDAIKFFGMSNLPRPDLKQVWAMADTKRQGYLGFKEFVASMQLVSLAQSGKEISNDVIHSDTVD FENLPPPMMEGLAELLAKQKRSSRLSDGDANGSPPQETSPSVRWFSSSKSVKKVSLSSVTSIVDGLKKLYLQKLKPLEVAYRFNDFVSPLLTNSDFDCKP MVMLLGQYSTGKTTFIKHLLKTSYPGSHIGPEPTTDRFVVVMSGPDERSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHPLLEHITFVDSPGVLS GEKQRIHRSYDFTGVTSWFASKCDLILLLFDPHKLDVSDEFKRVIASLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVMRVYIGSFND KPVNENAVGPLGRELFEKEQSDLLADLKDIPKKACDRRINEFVKRARAAKIHAYIISHLKKEMPSMMGKAKAQQRLIDNLADEFGKFHLPPGDFPNVEQF KEVLSGYNIDKFEKLKPKMIQAVDEMLGYDIPDLLKNFRNPYD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20290		ATEHD1	EPS15 homology domain 1 (.1.2)		Lus10032563 [exp]	0	1
AT5G16150		PGLCT, GLT1	GLUCOSE TRANSPORTER 1, plastid...		Lus10028486 [exp]	10.2	0.7647
AT2G28070		ABCG3	ATP-binding cassette G3, ABC-2...		Lus10041333 [exp]	13.6	0.7836
AT3G51120			DNA binding;zinc ion binding;n...		Lus10025973 [exp]	19.2	0.7618
AT1G67230		CRWN1, LINC1	CROWDED NUCLEI 1, little nucle...		Lus10034075 [exp]	20.8	0.7414
AT5G57480			P-loop containing nucleoside t...		Lus10006968 [exp]	21.6	0.7083
AT3G10650		AtNUP1	unknown protein		Lus10043447 [exp]	22.4	0.7715
AT3G15630			unknown protein		Lus10017768 [exp]	23.0	0.7182
AT3G17900			unknown protein		Lus10036712 [exp]	33.8	0.7382
AT3G54190			Transducin/WD40 repeat-like su...		Lus10035613 [exp]	36.7	0.7437
AT3G11220		ELO1	ELONGATA 1, Paxneb protein-rel...		Lus10032284 [exp]	40.2	0.7175

Compare expression of checked genes

Lus10032563 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.