Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22310 162 / 2e-53 Uncharacterised protein family (UPF0041) (.1) AT4G05590 155 / 8e-51 unknown protein AT4G14695 153 / 6e-50 Uncharacterised protein family (UPF0041) (.1), Uncharacterised protein family (UPF0041) (.2) AT5G20090 69 / 1e-16 Uncharacterised protein family (UPF0041) (.1), Uncharacterised protein family (UPF0041) (.2), Uncharacterised protein family (UPF0041) (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023745 [exp] 162 / 2e-53 AT4G22310 206 / 1e-70 Uncharacterised protein family (UPF0041) (.1) Lus10011790 [exp] 162 / 3e-53 AT4G22310 202 / 3e-69 Uncharacterised protein family (UPF0041) (.1) Lus10025851 [exp] 72 / 6e-18 AT5G20090 190 / 2e-64 Uncharacterised protein family (UPF0041) (.1), Uncharacterised protein family (UPF0041) (.2), Uncharacterised protein family (UPF0041) (.3) Lus10038250 [exp] 72 / 6e-18 AT5G20090 190 / 2e-64 Uncharacterised protein family (UPF0041) (.1), Uncharacterised protein family (UPF0041) (.2), Uncharacterised protein family (UPF0041) (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G023100 [exp] 160 / 6e-53 AT4G22310 205 / 3e-70 Uncharacterised protein family (UPF0041) (.1) Potri.001G333902 [exp] 80 / 5e-21 AT5G20090 144 / 5e-46 Uncharacterised protein family (UPF0041) (.1), Uncharacterised protein family (UPF0041) (.2), Uncharacterised protein family (UPF0041) (.3) Potri.012G095133 [exp] 65 / 4e-15 AT5G20090 199 / 5e-68 Uncharacterised protein family (UPF0041) (.1), Uncharacterised protein family (UPF0041) (.2), Uncharacterised protein family (UPF0041) (.3) Potri.015G092500 [exp] 63 / 4e-14 AT5G20090 189 / 7e-64 Uncharacterised protein family (UPF0041) (.1), Uncharacterised protein family (UPF0041) (.2), Uncharacterised protein family (UPF0041) (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0141 [flax] [poplar] MtN3-like PF03650 [flax] [poplar] MPC Mitochondrial pyruvate carriers
Representative CDS sequence Show only first row Show all	>Lus10032564 pacid=23146244 polypeptide=Lus10032564 locus=Lus10032564.g ID=Lus10032564.BGIv1.0 annot-version=v1.0 ATGGGAGCATTTGTAAAACTCCAGTCATTCTGGAACCATCCTGCAGGCCCCAGAACCATTCATTTCTGGGCACCGACATTCAAATGGGGAATCAGCATTG CTAACATCGCAGACTTCGCCAAACCACCCGACCTCATCTCTTACCCTCAGCAAATAGCTGTTGTAGCCACAGGACTTGTATGGTCTCGATACAGCTTGGC AATTACCCCGAAAAATTGGAACTTGTTCAGTGTGAACATATGTTTGGCTGGAACTGGGCTGTATCAGTTGTCCCGCAAGATGAAGTACTAA
AA sequence Show only first row Show all	>Lus10032564 pacid=23146244 polypeptide=Lus10032564 locus=Lus10032564.g ID=Lus10032564.BGIv1.0 annot-version=v1.0 MGAFVKLQSFWNHPAGPRTIHFWAPTFKWGISIANIADFAKPPDLISYPQQIAVVATGLVWSRYSLAITPKNWNLFSVNICLAGTGLYQLSRKMKY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G22310			Uncharacterised protein family...		Lus10032564 [exp]	0	1
AT1G63320			Pentatricopeptide repeat (PPR)...		Lus10009331 [exp]	3.0	0.8053
AT1G19250		FMO1	flavin-dependent monooxygenase...		Lus10008454 [exp]	8.5	0.7691
AT3G20640	bHLH	bHLH123	basic helix-loop-helix (bHLH) ...		Lus10029460 [exp]	27.5	0.7862
AT3G47090			Leucine-rich repeat protein ki...		Lus10003071 [exp]	36.6	0.7836
AT2G45400		BEN1	NAD(P)-binding Rossmann-fold s...		Lus10004029 [exp]	37.6	0.7154
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Lus10024009 [exp]	42.7	0.7930
AT3G47570			Leucine-rich repeat protein ki...		Lus10003072 [exp]	49.0	0.7807
AT1G65910	NAC	ANAC028	NAC domain containing protein ...		Lus10015554 [exp]	56.0	0.7887
AT2G24430	NAC	ANAC039, ANAC03...	Arabidopsis NAC domain contain...		Lus10020165 [exp]	61.7	0.7390
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10018748 [exp]	71.8	0.7338

Compare expression of checked genes

Lus10032564 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.