Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26780 249 / 5e-81 MGE2, AR192 mitochondrial GrpE 2, Co-chaperone GrpE family protein (.1) AT5G55200 233 / 3e-75 MGE1 mitochondrial GrpE 1, Co-chaperone GrpE family protein (.1) AT5G17710 59 / 8e-10 EMB1241 embryo defective 1241, Co-chaperone GrpE family protein (.1.2) AT1G36390 48 / 4e-06 Co-chaperone GrpE family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043180 [exp] 405 / 4e-142 AT4G26780 281 / 2e-93 mitochondrial GrpE 2, Co-chaperone GrpE family protein (.1) Lus10010247 [exp] 296 / 1e-100 AT5G55200 270 / 7e-91 mitochondrial GrpE 1, Co-chaperone GrpE family protein (.1) Lus10000783 [exp] 306 / 2e-100 AT5G55220 336 / 5e-109 trigger factor type chaperone family protein (.1) Lus10029654 [exp] 56 / 2e-08 AT5G17710 215 / 2e-67 embryo defective 1241, Co-chaperone GrpE family protein (.1.2) Lus10042696 [exp] 54 / 9e-08 AT1G36390 210 / 5e-66 Co-chaperone GrpE family protein (.1.2) Lus10024760 [exp] 49 / 3e-06 AT1G36390 209 / 2e-66 Co-chaperone GrpE family protein (.1.2) Lus10028034 [exp] 48 / 5e-06 AT5G17710 222 / 3e-70 embryo defective 1241, Co-chaperone GrpE family protein (.1.2) Lus10003741 [exp] 47 / 8e-06 AT5G17710 222 / 3e-70 embryo defective 1241, Co-chaperone GrpE family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G065800 [exp] 275 / 8e-91 AT4G26780 291 / 3e-97 mitochondrial GrpE 2, Co-chaperone GrpE family protein (.1) Potri.011G089000 [exp] 273 / 2e-90 AT4G26780 284 / 1e-94 mitochondrial GrpE 2, Co-chaperone GrpE family protein (.1) Potri.013G067900 [exp] 59 / 1e-09 AT5G17710 313 / 9e-106 embryo defective 1241, Co-chaperone GrpE family protein (.1.2) Potri.002G090000 [exp] 53 / 1e-07 AT1G36390 233 / 8e-76 Co-chaperone GrpE family protein (.1.2) Potri.005G171201 [exp] 49 / 2e-06 AT1G36390 213 / 7e-68 Co-chaperone GrpE family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01025 [flax] [poplar] GrpE GrpE
Representative CDS sequence Show only first row Show all	>Lus10032565 pacid=23146287 polypeptide=Lus10032565 locus=Lus10032565.g ID=Lus10032565.BGIv1.0 annot-version=v1.0 ATGTTGTCATCATCTAGGGTTTTGTCGCGAACCTCACGGATCTCCAGCGTCCGACGCCCCCTACTTCTTCTCTCCTCTGCCTCCTCCAAACACCACCACC ATTTGGTTCCGGAAATCTGTAATGGTGTTCAGCCTATTGTTCATAACCCCGACCATGTATCCAAGTTTCATCACTCAGCCTATAACTCTTTTCTCTTCCA AAACTTTGGCTTTGCTTCATCTGCGTCGTCTGAGCAAGCAGAGAAGGAAGAGGGCGCCACAGAGAGCAATGGGAAAGGAGAAGCAAATGAGGATGTGGAG TCTGGTGCTCCTTCACAAGATTCAGTCTCTAGCGAGAGCAACGAAGCAGGTTTTGATTCAGAATCTCAAGCAACTGAGTCTCAAGCTGCTAGAAGAAGGA GAAGGGGTGCTAAACGAACTGCATTTTCGGAGGAGGACGCTGCTGATCTTTCAAAGGATGACTTGTTGAAGCTTGTGCTCGAGAAGGATGAGCTGCTCAA ATCAAAGCAGGAAGAGTTTGAGATGATGAAAGATAAATTTCTTCGCAGCTTAGCAGAGAATGAGAATGTCATGGAAAGAACTAAACGTGAAGCAGAGAAT TCCAAAAAATTCGCCATTCAGAATTTTGCAAAAGGTCTGTTGGATGTTGGGGACAATTTGGAAAGGGCTTCTTCGGTTTTCAAAGAGAGTTTTGCCAAAA TCGACACGTCTAAAGACAGTACGGGAGTGGTGCAACTTGTGAAGTCGCTTTCCGAAGGTGTTGATATGACTGAGAAACAACTCGGGGAGGTTTTTAAGAA GTTTGGTTTGGAAAAATTCGACCCAATAAATGAACCTTTTGACCCGCATAGGCATAATGCTGCATTCCAAGTACCTGATGCATCTAAACCTCCAGGGACA GTTGCTCAAGTTCTCAAGGCGGGGTATATGCTTCATGAGCGGGTAGTTCGGCCAGCAGAAGTTGGTGTCACTCAAGGAGTTGAAAATGAGTAA
AA sequence Show only first row Show all	>Lus10032565 pacid=23146287 polypeptide=Lus10032565 locus=Lus10032565.g ID=Lus10032565.BGIv1.0 annot-version=v1.0 MLSSSRVLSRTSRISSVRRPLLLLSSASSKHHHHLVPEICNGVQPIVHNPDHVSKFHHSAYNSFLFQNFGFASSASSEQAEKEEGATESNGKGEANEDVE SGAPSQDSVSSESNEAGFDSESQATESQAARRRRRGAKRTAFSEEDAADLSKDDLLKLVLEKDELLKSKQEEFEMMKDKFLRSLAENENVMERTKREAEN SKKFAIQNFAKGLLDVGDNLERASSVFKESFAKIDTSKDSTGVVQLVKSLSEGVDMTEKQLGEVFKKFGLEKFDPINEPFDPHRHNAAFQVPDASKPPGT VAQVLKAGYMLHERVVRPAEVGVTQGVENE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26780		MGE2, AR192	mitochondrial GrpE 2, Co-chape...		Lus10032565 [exp]	0	1
AT1G69210			Uncharacterised protein family...		Lus10026674 [exp]	1.4	0.8615
AT1G05750		PDE247, CLB19	pigment defective 247, Tetratr...		Lus10001853 [exp]	3.9	0.7570
AT3G23710		AtTic22-III	translocon at the inner envelo...		Lus10022378 [exp]	3.9	0.8057
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10038396 [exp]	6.5	0.8066
AT1G34160			Tetratricopeptide repeat (TPR)...		Lus10004197 [exp]	7.9	0.7796
AT3G10350			P-loop containing nucleoside t...		Lus10021449 [exp]	9.1	0.7181
AT3G08000			RNA-binding (RRM/RBD/RNP motif...		Lus10031534 [exp]	9.4	0.7984
AT5G52630		MEF1	mitochondrial RNAediting facto...		Lus10011323 [exp]	10.2	0.7936
AT5G13050		5-FCL	5-formyltetrahydrofolate cyclo...		Lus10010736 [exp]	10.2	0.7458
AT5G08305			Pentatricopeptide repeat (PPR)...		Lus10010183 [exp]	11.3	0.7831

Compare expression of checked genes

Lus10032565 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.