Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22320 90 / 6e-22 unknown protein AT5G55210 77 / 8e-18 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043179 [exp] 155 / 2e-48 AT4G22320 86 / 7e-21 unknown protein Lus10021308 [exp] 86 / 1e-20 AT4G22320 131 / 8e-38 unknown protein Lus10016987 [exp] 81 / 8e-19 AT4G22320 130 / 2e-37 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G356400 [exp] 115 / 4e-32 AT5G55210 48 / 6e-07 unknown protein Potri.004G001500 [exp] 78 / 9e-18 AT4G22320 102 / 9e-27 unknown protein Potri.011G023200 [exp] 72 / 2e-15 AT4G22320 108 / 6e-29 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032566 pacid=23146441 polypeptide=Lus10032566 locus=Lus10032566.g ID=Lus10032566.BGIv1.0 annot-version=v1.0 ATGGAAGGCGTCGGCTCTCGCATCGGCCGCGCCTCTTCTCGCTACGGCCCGTCGGCTACCGCGAACGTGTTCAACGGTCCGGTCAGGAAGTGGAGGAAGA AATGGGTCTACGTTCCTCCACCGCCGACCACTAACCAGAGCTCGAACTCACAGTCAAACGGCCACCGCCACGGCGGAGGAAGAAGTAACAACATCAGCAC CACGACGAGCAACAACGGCAGCGACAACGGCTCTCGCCTCTTACTTTGTAGGTGGACCCCTCTCGCCGGCAGCGGCGACGAAGGAGACGGTTCTTCCACC GCAGACGAACAACCTCCCAAGAGGAGGTACCGTTACACTCCTATTGCGGCGCTAGAAGAGAGGAAGAAAGGATCGAAAAGTGTTGATCTTGAAGGTAAGG AAAGTGAAGGGGATGAGGTTTCCAAGGATGGCGATGACGAAACTATGAAGGAGGAAGACGAGGAGGAGGCTCAGGAGACTGGTGGTACACTGGACCTGGG ACTGGGACTGAAAGGGCAAAGCAGCAAGAGCGAGTCCCCAAGCCGGCACAAGGACGAAGAACCACCAAAGGAGAAGGCGAACCAAGGAAGGGTTTGGGCA TTTGGTTAA
AA sequence Show only first row Show all	>Lus10032566 pacid=23146441 polypeptide=Lus10032566 locus=Lus10032566.g ID=Lus10032566.BGIv1.0 annot-version=v1.0 MEGVGSRIGRASSRYGPSATANVFNGPVRKWRKKWVYVPPPPTTNQSSNSQSNGHRHGGGRSNNISTTTSNNGSDNGSRLLLCRWTPLAGSGDEGDGSST ADEQPPKRRYRYTPIAALEERKKGSKSVDLEGKESEGDEVSKDGDDETMKEEDEEEAQETGGTLDLGLGLKGQSSKSESPSRHKDEEPPKEKANQGRVWA FG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G22320			unknown protein		Lus10032566 [exp]	0	1
					Lus10034993 [exp]	1.0	0.9220
AT2G33845			Nucleic acid-binding, OB-fold-...		Lus10015411 [exp]	1.7	0.8803
AT1G32360	C3HZnF		Zinc finger (CCCH-type) family...		Lus10004573 [exp]	2.0	0.8941
AT3G02120			hydroxyproline-rich glycoprote...		Lus10015381 [exp]	4.2	0.8395
AT4G10810			unknown protein		Lus10010114 [exp]	5.7	0.8764
AT1G02840		ATSRP34, SR1, S...	Serine/Arginine-Rich Protein S...		Lus10008218 [exp]	7.3	0.8339
AT1G20830		MCD1	multiple chloroplast division ...		Lus10030727 [exp]	8.1	0.8227
AT4G40045			unknown protein		Lus10034155 [exp]	8.3	0.8088
AT1G20830		MCD1	multiple chloroplast division ...		Lus10013209 [exp]	11.5	0.8151
AT1G29140			Pollen Ole e 1 allergen and ex...		Lus10017940 [exp]	12.2	0.7725

Compare expression of checked genes

Lus10032566 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.