Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038590 [exp] 167 / 7e-54 ND / Lus10012637 [exp] 166 / 2e-52 ND 39 / 0.002 Lus10022515 [exp] 142 / 3e-42 ND 38 / 0.008 Lus10042943 [exp] 129 / 2e-38 ND 40 / 3e-04 Lus10022000 [exp] 104 / 3e-29 ND / Lus10021782 [exp] 103 / 3e-29 ND / Lus10036305 [exp] 103 / 8e-29 ND / Lus10040129 [exp] 102 / 5e-28 ND / Lus10007402 [exp] 96 / 7e-25 AT1G40087 45 / 1e-05 Plant transposase (Ptta/En/Spm family) (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03004 [flax] [poplar] Transposase_24 Plant transposase (Ptta/En/Spm family)
Representative CDS sequence Show only first row Show all	>Lus10032568 pacid=23146424 polypeptide=Lus10032568 locus=Lus10032568.g ID=Lus10032568.BGIv1.0 annot-version=v1.0 ATGGTAGCTATGTGTGGTGGCTCTGTTGGGGATGACGACGGTGATGAGAATAGGCGTCCTTCGAAGGAGAAGAGGGACTCATGGAACTGTCGTATGATCG ATAAGGAAGGTCGCCTCTTCGAGAAGAGCTTGAGGACTCGTAGATGGGGTGTATTGGGTCGAGACGGCTCAAAGGTGGTGTTGGAGTTAGACAAGTATAG GGTGCCTGTCGGCGAGGAGGGATGGTTCCTACGGATGGGAAAGGAAATTCAGGAGAAGGAGTTGAAAAGAGAGCCTACCCGAGGAGAGTTGTATCGAGAA ACTCAGAAGAGGAAAGGAGGCGGATACCCGAACAGTCCGACAAGAATAGCTGTGGAACAAGTTGACCAGTACATCAACGACCTTGAGACACATATATCCA TTAGCCCAATGATGTTGGAGGTCATCTCTTTCAGGGTAAGGAGCACCCTGGCCGTGTACGCGGTCTTGGATTAA
AA sequence Show only first row Show all	>Lus10032568 pacid=23146424 polypeptide=Lus10032568 locus=Lus10032568.g ID=Lus10032568.BGIv1.0 annot-version=v1.0 MVAMCGGSVGDDDGDENRRPSKEKRDSWNCRMIDKEGRLFEKSLRTRRWGVLGRDGSKVVLELDKYRVPVGEEGWFLRMGKEIQEKELKREPTRGELYRE TQKRKGGGYPNSPTRIAVEQVDQYINDLETHISISPMMLEVISFRVRSTLAVYAVLD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10032568 [exp]	0	1

Compare expression of checked genes

Lus10032568 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.