Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55250 400 / 1e-139 AtIAMT1, IAMT1 IAA carboxylmethyltransferase 1 (.1.2) AT5G56300 195 / 3e-59 GAMT2 gibberellic acid methyltransferase 2 (.1) AT4G26420 167 / 5e-50 GAMT1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT4G36470 167 / 9e-49 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G68040 164 / 1e-47 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G38780 162 / 8e-47 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G21950 155 / 4e-44 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G38020 154 / 5e-44 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G37970 151 / 2e-42 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G04370 149 / 8e-42 NAMT1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043177 [exp] 538 / 0 AT5G55250 532 / 0.0 IAA carboxylmethyltransferase 1 (.1.2) Lus10041380 [exp] 162 / 5e-47 AT4G36470 278 / 4e-91 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10025993 [exp] 157 / 2e-44 AT1G19640 288 / 1e-93 jasmonic acid carboxyl methyltransferase (.1) Lus10041776 [exp] 154 / 8e-44 AT4G36470 421 / 3e-147 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10036547 [exp] 146 / 8e-41 AT5G66430 243 / 1e-77 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10036550 [exp] 143 / 1e-39 AT3G11480 249 / 8e-80 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10036548 [exp] 146 / 3e-39 AT5G66430 250 / 1e-77 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10021802 [exp] 139 / 1e-38 AT1G68040 203 / 6e-63 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10024671 [exp] 140 / 3e-38 AT5G66430 280 / 2e-91 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G359000 [exp] 373 / 7e-129 AT5G55250 585 / 0.0 IAA carboxylmethyltransferase 1 (.1.2) Potri.007G021400 [exp] 187 / 2e-56 AT4G36470 469 / 4e-166 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.010G104800 [exp] 177 / 7e-53 AT1G68040 328 / 4e-111 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.019G022002 [exp] 172 / 6e-51 AT3G11480 309 / 3e-103 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G045900 [exp] 172 / 7e-51 AT1G19640 271 / 3e-88 jasmonic acid carboxyl methyltransferase (.1) Potri.019G022400 [exp] 172 / 7e-51 AT3G11480 311 / 4e-104 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.017G122950 [exp] 171 / 2e-50 AT1G15125 321 / 4e-108 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.008G136300 [exp] 169 / 1e-49 AT1G68040 379 / 7e-131 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.019G016102 [exp] 169 / 2e-49 AT1G68040 315 / 6e-106 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.017G122700 [exp] 169 / 2e-49 AT5G38780 322 / 2e-108 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03492 [flax] [poplar] Methyltransf_7 SAM dependent carboxyl methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10032569 pacid=23146278 polypeptide=Lus10032569 locus=Lus10032569.g ID=Lus10032569.BGIv1.0 annot-version=v1.0 ATGGCTGGGGAAAATATTGCAGTTGTAATTCCTACCTCCGGCAACACCATGAAGCTTGAGAAATTGCTTTGCATGAAAGGTGGCCAGGGTGACTCCAGCT ATGCCAACAACTCCAAAGCTCAGGCGTTGCATGCAAGATCAGTAGCACACATTCTGGAGGAAACCCTGGACAAGATCCAGCTCCAACCTCCTCCACACAA CTCCAAATTATTCCGGGTGGTGGATTTGGGATGTTCTTCAGGAAGCAACACCATCTCCACCGTCGAGTCCATCTTGAAACACATGCTCAAGCGGTTTCAG GCTGCCGGGTTGGACTTGCCGGAGTTCGCCGCTTTTTTCTCCGACCTCCCGAGCAACGACTTCAACACTCTGTTCAAACTGCTCCCGACCACAAACGAAG ACGAGGGATGCGGTGTTGAGTATTTCGCGGCGGGAGTTCCGGGGTCGTTTCACAAGCGGCTTTTCCCGACAAACTCCGTTGATTTCTTTCACTCAGCTTT CTCCCTTCACTGGCTCTCTCAGGTGCCAGAGGCAGTGATGGAGAAGAGATCAAGCGCATACAACAGAGGGAAAGTGTTCATCCATGGAGCTAAGGAGTCG ACTGTTTCTGCATACAAACATCAATTCCAGACTGACTTGGGAGCTTTCCTCAAAGCTAGATCTCTCGAGTTGACCACTGGTGGGACCATGTTCGTCGTCT GCTTGGGCCGGACCTCGCCCGACCCAACCGACCAAGGTGGTGCCGGGCTCCTGTTCGGGACCCACTTTCAGGATGCATGGAACGAACTTGTCCACAAGGT CGGTCGGACATTGTCCAGCAGCTGCCGGAGTGTGGCCGGAGTCCTTGTGGACGCCCACATTGGTGAAGAGTTGAGTGAGCAACTGTTTCTAAACGTGGAA CGGCGAGCCACTTGCCATGCTAGAGAGTTACTCGACGAGCTCCAATTCTACCATGTTGCTGCTTCCCTTTCTCTTCTTTAG
AA sequence Show only first row Show all	>Lus10032569 pacid=23146278 polypeptide=Lus10032569 locus=Lus10032569.g ID=Lus10032569.BGIv1.0 annot-version=v1.0 MAGENIAVVIPTSGNTMKLEKLLCMKGGQGDSSYANNSKAQALHARSVAHILEETLDKIQLQPPPHNSKLFRVVDLGCSSGSNTISTVESILKHMLKRFQ AAGLDLPEFAAFFSDLPSNDFNTLFKLLPTTNEDEGCGVEYFAAGVPGSFHKRLFPTNSVDFFHSAFSLHWLSQVPEAVMEKRSSAYNRGKVFIHGAKES TVSAYKHQFQTDLGAFLKARSLELTTGGTMFVVCLGRTSPDPTDQGGAGLLFGTHFQDAWNELVHKVGRTLSSSCRSVAGVLVDAHIGEELSEQLFLNVE RRATCHARELLDELQFYHVAASLSLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55250		AtIAMT1, IAMT1	IAA carboxylmethyltransferase ...		Lus10032569 [exp]	0	1
AT3G63060		EDL3	EID1-like 3 (.1)		Lus10028001 [exp]	10.0	0.7252
AT4G36210			Protein of unknown function (D...		Lus10010626 [exp]	10.2	0.7191
AT1G67980		CCOAMT	caffeoyl-CoA 3-O-methyltransfe...		Lus10034584 [exp]	79.5	0.6492
AT2G19380			RNA recognition motif (RRM)-co...		Lus10020460 [exp]	94.7	0.6514
AT5G43290	WRKY	ATWRKY49, WRKY4...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10024380 [exp]	113.3	0.6624
AT5G23190		CYP86B1	"cytochrome P450, family 86, s...		Lus10040986 [exp]	229.3	0.6410

Compare expression of checked genes

Lus10032569 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.