Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55310 915 / 0 TOP1alpha, TOP1BETA DNA topoisomerase 1 beta (.1) AT5G55300 432 / 4e-142 MGO1, TOP1BETA, TOP1ALPHA TOPOISOMERASE 1, MGOUN 1, DNA topoisomerase I alpha (.1.2.3) AT4G26701 126 / 1e-34 DNA binding;DNA topoisomerase type Is (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043175 [exp] 1489 / 0 AT5G55300 971 / 0.0 TOPOISOMERASE 1, MGOUN 1, DNA topoisomerase I alpha (.1.2.3) Lus10043172 [exp] 1222 / 0 AT5G55310 880 / 0.0 DNA topoisomerase 1 beta (.1) Lus10032572 [exp] 698 / 0 AT5G55310 580 / 0.0 DNA topoisomerase 1 beta (.1) Lus10032573 [exp] 636 / 0 AT5G55300 213 / 3e-61 TOPOISOMERASE 1, MGOUN 1, DNA topoisomerase I alpha (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G359700 [exp] 1116 / 0 AT5G55310 934 / 0.0 DNA topoisomerase 1 beta (.1) Potri.011G092700 [exp] 1049 / 0 AT5G55310 912 / 0.0 DNA topoisomerase 1 beta (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0382 [flax] [poplar] DNA-mend PF01028 [flax] [poplar] Topoisom_I Eukaryotic DNA topoisomerase I, catalytic core CL0382 [flax] [poplar] PF02919 [flax] [poplar] Topoisom_I_N Eukaryotic DNA topoisomerase I, DNA binding fragment
Representative CDS sequence Show only first row Show all	>Lus10032571 pacid=23146365 polypeptide=Lus10032571 locus=Lus10032571.g ID=Lus10032571.BGIv1.0 annot-version=v1.0 ATGGCTGTTCAAACACCTGCCAGGCGCATCATGGATGATATGGATTCTGAGGATGATGATAAGCCATTGGTTTTTAGAAGGAATGGTAGCTCCGCGGCTA CGCAAAGCCAAGTGAAGGCTGAAGTTAAGAGACTGCCGTCTTCGTCTCAAAATGTTAATGGCCAAAGCTCGAATGGGCAGAGGGATAAAGCCCCGGTTAC ATCTTCTAAGTCGCCGCCAGTTAAATCTCCCATAGGGAGCCCTAGAGCATCGACTTCATCTATGAAAGCATCTCCATTGCAATCTCCTGTAACAAATCCA AAGTCGTCAATTTCTTTGGCGAGCAAGCAGGGACTTAAGCACAATGCTTCTTCTGCTGTTAGGACGGAGACTAAGTCTGTAAAATCTGAGAACACGTCTC AGATTGATGATGAGGATTCCGAGGATGATAAGCCCTTGAGTTACAGAATGAAGGGATCTGGCAACAATGCTCAGAAAGGAGTCGGTGCTCCCTCTCAGGT GAAAAAGGAAGATTCTGATGATGATGACGATTTACCTTTGGCTTCAAGAATTTCAACAAAACCTAATCAATCTAGTGAAAAAAAACTCTTACCATCAAGA TCTCAGAAAAATGGTTCAACGTCAAATGAGAAGAAGGTCCATCCTCTGCCGAACAAGAGACCTACGGAGGTGAGCAATAGAATGGATCAATCCTCTGCTA AAAAGCCAAAGCTGTCTGCTCCATCCACCACCACGAAAGTCGAACCACGAGCATCTAAAGCAGCGGAGAGGGTGGATGATGATGATGATGTTCCGATCTC CCAGAGGATCAAGAAGCAAGCGATTGCAGAAAGAAAACAGTTATCTTCATCAAAAGCAACAAAAGTGGTCTCTTCTTCATTCAAAAAGACCAATATTAAG AGCAAGACACAAGTCAAAACTTCCAAGTATTCCACGTCAACAAAATTCCAGCCGAGCTCCAATGATGGCCAGAAAAAATTGACCACCTTGGTTCATAACG GTGTAATATTTCCTCCTCCATATCAGTCTCATGGGGTTAAGATGCGATACAAAGGGAAACAAGTTGATTTAACTCCTGAACAAGAAGAGGTTGCTACCAT GTTTGCTGTGATGAAGGATACTGACTACATGCAAAAACCGAAGTTCCTCGAGAACTTCTGGAATGATTGGCGTAAGATACTGGGGAAGAACCATGTCATT CAGAAGTTGGATGACTGTGATTTTACACCAATATATGACTGGCATCAGCAAGAGAAGGAGAAGAAAAAACAAATGAGTACAGAAGAGAAGAAAGCAATCA AAGAAGAAAAACTGAAACAGGAAGAGAAATATATGTGGGCTATAGTGGACGGTGTTAAAGAAAAGGTCGGGAACTTCAGAGTTGAACCTCCAGGTTTGTT TCGAGGCCGTGGAGAGCATCCAAAGATGGGAAAGCTGAAGAGGCGTATTCGTCCTAAGGATATCACCATAAACATTGGTAAAGACGCTCCTATTCCAGAA TGTCCAATTGAGGGTGAAAGCTGGAATGAAATAAAGCATGATAATACTGTTACATGGCTGGCTTTCTGGAATGATCCTATCAACCCCAGAGAATTCAAGT ATGTGTTCTTGGCAGCTAGCAGTTCATTAAAAGGGCTAAGTGATAAAGAGAAATATGAAAAAGCACGAAAGCTGAAGGACTACATACGCAGTATAAGGAC CGCTTACACAAGGGATTTCAGCAGTAAAGATGTCACAAAGCAGCAAATAGCAGTTGCTACGTATCTTATCGATAAACTAGCTCTTAGGGCGGGTAATGAG AAGGATGATGATGAAGCTGATACGGTTGGTTGCTGTACCTTAAAAGTATCAAATGTGGAGTGCGTCCCTCCCAATATGCTAAAGTTTGACTTTCTCGGTA AAGATTCAATTCGTTATGAGAACACAGTTGAGGTCGAGCTTCCTGTGTTCAAAGCAATTGGACAATTCCAAACTGGCAAAAAAGATGGTGATCTCCTTTT TGACCAACTGGATACGTCTAAACTGAACGCCCACTTGAAAGAACTAATGCCTGGGCTTACAGCAAAGGTTTTTCGTACCTACAATGCTTCAATCACATTG GATGAGCAATTATATGAAGAAACAGAAGATGGTGATGTTGCAGAAAAAGTTGTCGTGTATCAAAAGGCAAACAAGCAGGTTGCAATCATCTGTAATCATC AGCGTACTGTTTCCAAAAGTCATGATTCTCAAATGATGAGGTTGACTGAGAGGATCGATGCAGCTAAGGAAGAAGTGAAAGAGCTAAAAATTGATTTGGA GAGGGCTAAAAAGGGGAAGCCACCATTGAAGGGTGCAGATGGAAAGCAAAAGAGGAACTTGAATCCTGAAGCGATAGAGAAAAAAATAGCATCAGCGAAG CAAAAGATCGACAAGTACGAAATGGACATGAAGACGAAGGAGGATCTGAAAACAGTAGCACTGGGGACATCGAAGATAAACTATCTGGATCCTAGGATCA CAGTTGCATGGTGCAAGAGGCACGACGTTCCTATTGAGAAGATATTCAACAAATCACTTCTAGCAAAGTTTGCATGGGCAATGGACGTTGATCCACAGTT CAGATTCTGA
AA sequence Show only first row Show all	>Lus10032571 pacid=23146365 polypeptide=Lus10032571 locus=Lus10032571.g ID=Lus10032571.BGIv1.0 annot-version=v1.0 MAVQTPARRIMDDMDSEDDDKPLVFRRNGSSAATQSQVKAEVKRLPSSSQNVNGQSSNGQRDKAPVTSSKSPPVKSPIGSPRASTSSMKASPLQSPVTNP KSSISLASKQGLKHNASSAVRTETKSVKSENTSQIDDEDSEDDKPLSYRMKGSGNNAQKGVGAPSQVKKEDSDDDDDLPLASRISTKPNQSSEKKLLPSR SQKNGSTSNEKKVHPLPNKRPTEVSNRMDQSSAKKPKLSAPSTTTKVEPRASKAAERVDDDDDVPISQRIKKQAIAERKQLSSSKATKVVSSSFKKTNIK SKTQVKTSKYSTSTKFQPSSNDGQKKLTTLVHNGVIFPPPYQSHGVKMRYKGKQVDLTPEQEEVATMFAVMKDTDYMQKPKFLENFWNDWRKILGKNHVI QKLDDCDFTPIYDWHQQEKEKKKQMSTEEKKAIKEEKLKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIRPKDITINIGKDAPIPE CPIEGESWNEIKHDNTVTWLAFWNDPINPREFKYVFLAASSSLKGLSDKEKYEKARKLKDYIRSIRTAYTRDFSSKDVTKQQIAVATYLIDKLALRAGNE KDDDEADTVGCCTLKVSNVECVPPNMLKFDFLGKDSIRYENTVEVELPVFKAIGQFQTGKKDGDLLFDQLDTSKLNAHLKELMPGLTAKVFRTYNASITL DEQLYEETEDGDVAEKVVVYQKANKQVAIICNHQRTVSKSHDSQMMRLTERIDAAKEEVKELKIDLERAKKGKPPLKGADGKQKRNLNPEAIEKKIASAK QKIDKYEMDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHDVPIEKIFNKSLLAKFAWAMDVDPQFRF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55310		TOP1alpha, TOP1...	DNA topoisomerase 1 beta (.1)		Lus10032571 [exp]	0	1
AT2G21470		EMB2764, ATSAE2...	EMBRYO DEFECTIVE 2764, SUMO-ac...		Lus10017479 [exp]	1.4	0.8152
AT5G06780		AtEML2, ACK4	EMSY-like 2, Emsy N Terminus (...		Lus10021038 [exp]	1.4	0.8783
AT2G06005		FIP1	FRIGIDA interacting protein 1 ...		Lus10021558 [exp]	5.0	0.8007
AT4G08310			unknown protein		Lus10028028 [exp]	5.3	0.8011
AT3G52660			RNA-binding (RRM/RBD/RNP motif...		Lus10017026 [exp]	6.5	0.8138
AT3G24150			unknown protein		Lus10019404 [exp]	8.5	0.8003
AT4G35140			Transducin/WD40 repeat-like su...		Lus10023993 [exp]	12.4	0.7682
AT3G28455		CLE25	CLAVATA3/ESR-RELATED 25 (.1)		Lus10005836 [exp]	12.6	0.7315
AT5G63200			tetratricopeptide repeat (TPR)...		Lus10033033 [exp]	13.5	0.7538
AT1G67690			Zincin-like metalloproteases f...		Lus10037058 [exp]	13.7	0.7879

Compare expression of checked genes

Lus10032571 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.