Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55310 575 / 0 TOP1alpha, TOP1BETA DNA topoisomerase 1 beta (.1) AT5G55300 563 / 0 MGO1, TOP1BETA, TOP1ALPHA TOPOISOMERASE 1, MGOUN 1, DNA topoisomerase I alpha (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043175 [exp] 697 / 0 AT5G55300 971 / 0.0 TOPOISOMERASE 1, MGOUN 1, DNA topoisomerase I alpha (.1.2.3) Lus10032571 [exp] 694 / 0 AT5G55310 971 / 0.0 DNA topoisomerase 1 beta (.1) Lus10043172 [exp] 679 / 0 AT5G55310 880 / 0.0 DNA topoisomerase 1 beta (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G359700 [exp] 632 / 0 AT5G55310 934 / 0.0 DNA topoisomerase 1 beta (.1) Potri.011G092700 [exp] 623 / 0 AT5G55310 912 / 0.0 DNA topoisomerase 1 beta (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0382 [flax] [poplar] DNA-mend PF01028 [flax] [poplar] Topoisom_I Eukaryotic DNA topoisomerase I, catalytic core CL0382 [flax] [poplar] PF02919 [flax] [poplar] Topoisom_I_N Eukaryotic DNA topoisomerase I, DNA binding fragment
Representative CDS sequence Show only first row Show all	>Lus10032572 pacid=23146336 polypeptide=Lus10032572 locus=Lus10032572.g ID=Lus10032572.BGIv1.0 annot-version=v1.0 ATGTGGGCTATAGTGGATGGTGTTAAAGAAAAGGTTGGGAACTTCAGAGTTGAACCTCCAGGTTTGTTTCGTGGCCGTGGAGAGCATCCAAAGATGGGAA AGCTGAAGAGGCGTATTCGTCCTAAGGATATCACCATAAACATCGGTAAAGACGCTCCTATTCCAGAATGTCCGATTGATGGTGAAAGCTGGAATGAAAT AAAGCATGATAATACTGTTACATGGTTGGCTTTCTGGAATGATCCTATCAACCCCAAAGAATTCAAGTATGTGTTCTTGGCAGCTAGCAGTTCATTAAAA GGGCAAAGTGATAAAGAGAAATATGAAAAAGCAAGGAAGCTGAAGGTCGAGATCATTGTTTTCTCATATTCTTCAGCTGCTTTCAGTGGTAAGTTTTTGA AAAGCAACGAGTCTAACTATATGTTACTGCAGGACTACATACGCAGTATAAGGACAGCTTACACAAGGGATTTCACTAGTAAAGATGTCACGAAACGACA AATAGCAGTTGCTACGTATCTTATTGATAAACTAGCTCTTAGGGCGGGTAATGAGAAGGATGATGATGAAGCTGATACGGTCGGTTGCTGTACCTTAAAA GTATCAAATGTGGAGTGCGTCCCTCCCAATATGCTAAAGTTTGACTTTCTTGGTAAAGATTCAATTCGTTATGAGAACACAGTTGAGGTCGAGCTTCCTG TGTTCAAAGCAATTGGACAATTCCAAACTGGCAAAAAAGATGCTGATCTTCTTTTTGACCAGCTGGATACGTCTAAACTGAATGCCCACTTGAAAGAACT AATGCCTGGGCTTACAGCAAAGGTTTTTCGTACCTACAATGCCTCAATCACATTGGATGAGCAATTATATGAAGAAACAGAAGATGGTGATGTTGCAGAG AAAGTTGTCGTGTATCAAAAGGCAAACAAACAGGTTGCAATCATCTGCAATCATCAGCGTACCGTTTCAAAAAGTCACGATTCTCAAATGACGAGGTTGA CTGAGAGGATTGACACTGCTAAGGAAGAAGTGAAAGAGTTAAAAATTGATTTGGAGAGGGCTAAAAAGGGGAAGCCACCATTGAAGGGTGCAGATGGAAA GCAAAAGAGGAACTTGAATCCTGAAGCGTAA
AA sequence Show only first row Show all	>Lus10032572 pacid=23146336 polypeptide=Lus10032572 locus=Lus10032572.g ID=Lus10032572.BGIv1.0 annot-version=v1.0 MWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIRPKDITINIGKDAPIPECPIDGESWNEIKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLK GQSDKEKYEKARKLKVEIIVFSYSSAAFSGKFLKSNESNYMLLQDYIRSIRTAYTRDFTSKDVTKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLK VSNVECVPPNMLKFDFLGKDSIRYENTVEVELPVFKAIGQFQTGKKDADLLFDQLDTSKLNAHLKELMPGLTAKVFRTYNASITLDEQLYEETEDGDVAE KVVVYQKANKQVAIICNHQRTVSKSHDSQMTRLTERIDTAKEEVKELKIDLERAKKGKPPLKGADGKQKRNLNPEA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55310		TOP1alpha, TOP1...	DNA topoisomerase 1 beta (.1)		Lus10032572 [exp]	0	1
AT5G66600			Protein of unknown function, D...		Lus10016786 [exp]	1.0	0.8972
AT5G12230		MED19A	unknown protein		Lus10008738 [exp]	2.2	0.8764
AT5G38720			unknown protein		Lus10008877 [exp]	2.8	0.8726
AT3G54170		ATFIP37	FKBP12 interacting protein 37 ...		Lus10027681 [exp]	10.1	0.8762
AT4G39910		ATUBP3	ubiquitin-specific protease 3 ...		Lus10014333 [exp]	12.2	0.8796
AT3G05210		UVR7, ERCC1	UV REPAIR DEFICIENT 7, nucleot...		Lus10004462 [exp]	13.0	0.8681
AT4G12740			HhH-GPD base excision DNA repa...		Lus10043074 [exp]	14.1	0.8706
AT2G43370			RNA-binding (RRM/RBD/RNP motif...		Lus10025557 [exp]	14.9	0.8884
AT2G39740		HESO1	HEN1 suppressor 1, Nucleotidyl...		Lus10030154 [exp]	19.1	0.8792
AT2G32230		PRORP1	proteinaceous RNase P 1 (.1)		Lus10038817 [exp]	20.9	0.8063

Compare expression of checked genes

Lus10032572 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.