Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55310 157 / 7e-42 TOP1alpha, TOP1BETA DNA topoisomerase 1 beta (.1) AT5G55300 44 / 0.0002 MGO1, TOP1BETA, TOP1ALPHA TOPOISOMERASE 1, MGOUN 1, DNA topoisomerase I alpha (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032571 [exp] 631 / 0 AT5G55310 971 / 0.0 DNA topoisomerase 1 beta (.1) Lus10043175 [exp] 575 / 0 AT5G55300 971 / 0.0 TOPOISOMERASE 1, MGOUN 1, DNA topoisomerase I alpha (.1.2.3) Lus10043172 [exp] 225 / 6e-67 AT5G55310 880 / 0.0 DNA topoisomerase 1 beta (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G359700 [exp] 286 / 1e-88 AT5G55310 934 / 0.0 DNA topoisomerase 1 beta (.1) Potri.011G092700 [exp] 244 / 7e-73 AT5G55310 912 / 0.0 DNA topoisomerase 1 beta (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02919 [flax] [poplar] Topoisom_I_N Eukaryotic DNA topoisomerase I, DNA binding fragment
Representative CDS sequence Show only first row Show all	>Lus10032573 pacid=23146438 polypeptide=Lus10032573 locus=Lus10032573.g ID=Lus10032573.BGIv1.0 annot-version=v1.0 ATGGCTGTTCAAACATCTGCCAGGCGCATCATGGATGATATGGATTCTGAGGATGATGATAAGCCATTGGTTTTTAGAAGGAATGGTAGCTCCGCGGCTA CGCAAAGCCAAGTGAAGGCTGAAGTTAAGAGACTGCCGTCTTCGTCTCAAAATGTTAATGGCCAAAGCTCGAATGGGCAGAGGGATAAAGCCCCGGTTAC ATCTTCTAAGTCGCCGCCAGTTAAATCTCCCATAGGGAGCCCTAGAGCATCGACTTCATCTATGAAAGCATCTCCATTGCAATCTCCTGTAACAAATCCA AAGTCGTCAATTTCTTTGGCGAGCAAGCAGGGACTTAAGCACAATGCTTCTTCTGCTGTTAGGACGGAGACTAAGTCTGTAAAATCTGAGAACACGTCTC AGATTGATGATGAGGATTCCGAGGATGATAAGCCCTTGAGTTACAGAATGAAGGGATCTGGCAACAATGCTCAGAAAGGAGTCGGTGCTCCCTCTCAGGT GAAAAAGGAAGATTCTGATGATGATGACGATTTACCTTTGGCTTCAAGAATTTCAACAAAACCTAATCAATCTAGTGAAAAAAAACTCTTACCATCAAGA TCTCAGAAAAATGGTTCAACGTCAAATGAGAAGAAGGTCCATCCTCTGCCGAACAAGAGACCTACGGAGGTGAGCAATAGAATGGATCAATCCTCTGCTA AAAAGCCAAAGCTGTCTGCTCCATCCACCACCACGAAAGTCGAACCACGAGCATCTAAAGCAGCGGAGAGGGTGGATGATGATGATGATGTTCCGATCTC CCAGAGGATCAAGAAGCAAGCGATTGCAGAAAGAAAACAGTTATCTTCATCAAAAGCAACAAAAGTGGTCTCTTCTTCATTCAAAAAGACCAATATTAAG AGCAAGACACAAGTCAAAACTTCCAAGTATTCCACGTCAACAAAATTCCAGCCGAGCTCCAATGATGGCCAGAAAAAATGGACCACCTTGGTTCATAACG GTGTAATATTTCCTCCTCCATATCAGTCTCATGGGGTTAAGATGCGATACAAAGGGAAACAAGTTGATTTAACTCCTGAACAAGAAGAGGTTGCTACCAT GTTTGCTGTGATGAAGGATACTGACTACATGCAAAAACCGAAGTTCCTCGAGAACTTCTGGAATGATTGGCGTAAGATACTGGGGAAGAACCATGTCATA CAGAAGCTGGATGACTGA
AA sequence Show only first row Show all	>Lus10032573 pacid=23146438 polypeptide=Lus10032573 locus=Lus10032573.g ID=Lus10032573.BGIv1.0 annot-version=v1.0 MAVQTSARRIMDDMDSEDDDKPLVFRRNGSSAATQSQVKAEVKRLPSSSQNVNGQSSNGQRDKAPVTSSKSPPVKSPIGSPRASTSSMKASPLQSPVTNP KSSISLASKQGLKHNASSAVRTETKSVKSENTSQIDDEDSEDDKPLSYRMKGSGNNAQKGVGAPSQVKKEDSDDDDDLPLASRISTKPNQSSEKKLLPSR SQKNGSTSNEKKVHPLPNKRPTEVSNRMDQSSAKKPKLSAPSTTTKVEPRASKAAERVDDDDDVPISQRIKKQAIAERKQLSSSKATKVVSSSFKKTNIK SKTQVKTSKYSTSTKFQPSSNDGQKKWTTLVHNGVIFPPPYQSHGVKMRYKGKQVDLTPEQEEVATMFAVMKDTDYMQKPKFLENFWNDWRKILGKNHVI QKLDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55300		MGO1, TOP1BETA,...	TOPOISOMERASE 1, MGOUN 1, DNA ...		Lus10032573 [exp]	0	1
AT1G54490		ATXRN4, XRN4, E...	ETHYLENE INSENSITIVE 5, ACC IN...		Lus10015946 [exp]	2.6	0.9302
AT2G41520		TPR15	tetratricopeptide repeat 15, H...		Lus10035427 [exp]	4.5	0.9181
AT4G10320			tRNA synthetase class I (I, L,...		Lus10024041 [exp]	5.2	0.9184
AT2G21440			RNA-binding (RRM/RBD/RNP motif...		Lus10042589 [exp]	5.9	0.9160
AT5G64270			splicing factor, putative (.1)		Lus10034803 [exp]	6.5	0.9257
AT5G04240	JUMONJI	ELF6	EARLY FLOWERING 6, Zinc finger...		Lus10009218 [exp]	7.5	0.8847
AT5G54570		BGLU41	beta glucosidase 41 (.1)		Lus10037987 [exp]	9.7	0.8728
AT2G02560		TIP120, HVE, ET...	HEMIVENATA, CULLIN-ASSOCIATED ...		Lus10026261 [exp]	11.0	0.9111
AT1G04160		XI-B, XI-8, ATX...	MYOSIN XI-8, ARABIDOPSIS THALI...		Lus10009791 [exp]	11.2	0.8951
AT5G47690			binding (.1.2.3)		Lus10039082 [exp]	12.7	0.9130

Compare expression of checked genes

Lus10032573 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.