Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25300 419 / 2e-146 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G17020 416 / 1e-145 ATSRG1, SRG1 senescence-related gene 1 (.1) AT1G17010 415 / 5e-145 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G25310 402 / 9e-140 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G78550 392 / 3e-136 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G21420 274 / 1e-89 LBO1 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G05600 235 / 3e-74 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G38240 233 / 9e-74 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G11180 231 / 2e-72 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G49390 226 / 4e-71 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022292 [exp] 511 / 0 AT1G17020 449 / 5e-159 senescence-related gene 1 (.1) Lus10026173 [exp] 419 / 3e-146 AT1G17020 443 / 5e-156 senescence-related gene 1 (.1) Lus10011980 [exp] 375 / 2e-129 AT1G17020 382 / 1e-132 senescence-related gene 1 (.1) Lus10011985 [exp] 374 / 1e-128 AT1G17020 367 / 4e-126 senescence-related gene 1 (.1) Lus10011981 [exp] 374 / 1e-128 AT1G17020 375 / 2e-129 senescence-related gene 1 (.1) Lus10015252 [exp] 370 / 4e-127 AT1G17020 375 / 1e-129 senescence-related gene 1 (.1) Lus10011979 [exp] 351 / 7e-120 AT1G17020 374 / 4e-129 senescence-related gene 1 (.1) Lus10030934 [exp] 328 / 1e-110 AT1G17020 337 / 2e-114 senescence-related gene 1 (.1) Lus10030995 [exp] 323 / 1e-108 AT1G17020 339 / 2e-115 senescence-related gene 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G381700 [exp] 485 / 1e-172 AT1G17020 436 / 2e-153 senescence-related gene 1 (.1) Potri.001G382400 [exp] 468 / 4e-166 AT1G17020 446 / 1e-157 senescence-related gene 1 (.1) Potri.001G355100 [exp] 407 / 1e-141 AT1G17020 439 / 1e-154 senescence-related gene 1 (.1) Potri.009G025900 [exp] 393 / 3e-136 AT4G25300 410 / 3e-143 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.001G355200 [exp] 315 / 1e-105 AT1G17020 329 / 3e-111 senescence-related gene 1 (.1) Potri.009G022800 [exp] 288 / 3e-95 AT1G17020 302 / 6e-101 senescence-related gene 1 (.1) Potri.010G023600 [exp] 260 / 4e-84 AT3G21420 511 / 0.0 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G201000 [exp] 242 / 4e-77 AT3G21420 290 / 5e-96 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G200900 [exp] 241 / 1e-76 AT3G21420 288 / 4e-95 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.006G101200 [exp] 236 / 1e-74 AT5G05600 474 / 3e-168 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10032574 pacid=23146302 polypeptide=Lus10032574 locus=Lus10032574.g ID=Lus10032574.BGIv1.0 annot-version=v1.0 ATGAGCCTCGGGAGCTCTCTGCTGGTTCCTTCCGTTCAGGAGTTGGTTAAGGAACCACTCGGTTCAGTTCCGCCCAGATACTTGCGCCCTGACCTTGACC AGCTCGCTGTCGTCTCTGCTGATGACGATGGATCCGGCCTGGAGGTTCCAGTTGTTGATTTGGGGAAGCTGATCGATGAAGCCTCCATGGAATCCGAGCT CGCCAAACTCCACTCCGCCTGTAAAGATTGGGGCTTTTTCCAGGTATCTACCATCCATCCATCCTCCAAATCCCTTATGGCAAATGGGTACGGACCACTT AGGTGGTTGGAGTTGGTAAACCATGGAGTGAGGGCTAGTGTGGTGGATGACATGAAGAAACAAGTTGAGGAATTCTTCAACCTCCCAATGGAAGCAAAGC AAAAATTCTGGCAATACCCTGGCGAACTCGAAGGCTTCGGACAGACATTCGTCGTGTCCGAGGAACAGAAGCTCGATTGGGCCGACGTGTTCTTCCTCGT AACTCAACCTCCAAATCTCAGAAAGCCACACTTACTCCCACAGCTCCCTCTCCCTTTCAGACGCACATTGGAGAGCTACTCCCTAGAGGTAAAAGAGTTA GCCGGAAAAATACTCTCCCAAATGGCCAAAGCACTCGTCATGAACCCAGAGGAAATGATCGAAATCTTCTCAGGAAACATAAGGCAAACAATGAGGACGA ATTACTACCCTCCTTGCCCCGAACCCGACAAGGCCATCGGCCTAACGCCTCATTCCGATGGGACAGGTTTGACCATCCTGTTGCAAGTCAGCGAGGTCGA AGGGTTACAGATAAAGAAAGACGGGAAGTGGGTTTCGGTGGAGGTGCTTCGCGATGCGTTTGTGGTTAATGTTGGTGACATTCTGGAGATTATAACGAAT GGCGAATACAGGAGTGTTGAACATAGGGCTGTTGTGAATTCGGAGAAGCAGAGGATGTCGATCGCTTGTTTCCACTCCCCTAGGTTTGATGGGGTGGTTG CTCCAGCGCCGAGCTTGGTTCGTGGAGAAGAGAAGCCGGCGTTGTTCAGGAGTGTGACTGTGAAGGAGTTCTTTAGAGGGTTTTTCTCTCGTGAGCTTCG GGAGAAGTCTTACCTTGATACCTTGAGAATTTAG
AA sequence Show only first row Show all	>Lus10032574 pacid=23146302 polypeptide=Lus10032574 locus=Lus10032574.g ID=Lus10032574.BGIv1.0 annot-version=v1.0 MSLGSSLLVPSVQELVKEPLGSVPPRYLRPDLDQLAVVSADDDGSGLEVPVVDLGKLIDEASMESELAKLHSACKDWGFFQVSTIHPSSKSLMANGYGPL RWLELVNHGVRASVVDDMKKQVEEFFNLPMEAKQKFWQYPGELEGFGQTFVVSEEQKLDWADVFFLVTQPPNLRKPHLLPQLPLPFRRTLESYSLEVKEL AGKILSQMAKALVMNPEEMIEIFSGNIRQTMRTNYYPPCPEPDKAIGLTPHSDGTGLTILLQVSEVEGLQIKKDGKWVSVEVLRDAFVVNVGDILEIITN GEYRSVEHRAVVNSEKQRMSIACFHSPRFDGVVAPAPSLVRGEEKPALFRSVTVKEFFRGFFSRELREKSYLDTLRI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25300			2-oxoglutarate (2OG) and Fe(II...		Lus10032574 [exp]	0	1
AT4G27880			Protein with RING/U-box and TR...		Lus10022405 [exp]	1.4	0.9140
AT1G66240		ATX1, ATATX1	homolog of anti-oxidant 1 (.1....		Lus10008963 [exp]	2.8	0.9028
AT4G24290			MAC/Perforin domain-containing...		Lus10010894 [exp]	5.7	0.9101
AT3G12800		SDRB, DECR	short-chain dehydrogenase-redu...		Lus10017129 [exp]	5.9	0.8979
AT1G30090			Galactose oxidase/kelch repeat...		Lus10042824 [exp]	6.7	0.9021
AT4G18930			RNA ligase/cyclic nucleotide p...		Lus10029278 [exp]	10.0	0.8772
AT3G60800			DHHC-type zinc finger family p...		Lus10024561 [exp]	13.2	0.8743
AT2G02960			RING/FYVE/PHD zinc finger supe...		Lus10037172 [exp]	13.3	0.8918
AT3G49390		CID10	CTC-interacting domain 10 (.1....		Lus10032942 [exp]	14.3	0.8675
AT4G36945			PLC-like phosphodiesterases su...		Lus10000092 [exp]	16.2	0.8895

Compare expression of checked genes

Lus10032574 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.