Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26670 192 / 2e-62 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) AT5G55510 187 / 6e-60 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) AT3G10110 54 / 3e-09 MEE67 maternal effect embryo arrest 67, Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) AT1G18320 53 / 5e-09 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) AT5G24650 41 / 0.0002 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) AT3G49560 40 / 0.0006 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043170 [exp] 332 / 4e-117 AT4G26670 220 / 5e-73 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) Lus10026848 [exp] 57 / 4e-10 AT3G10110 224 / 5e-76 maternal effect embryo arrest 67, Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) Lus10020223 [exp] 56 / 2e-09 AT3G10110 229 / 8e-78 maternal effect embryo arrest 67, Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) Lus10032913 [exp] 42 / 0.0002 AT5G24650 234 / 6e-77 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G360300 [exp] 204 / 9e-67 AT5G55510 254 / 2e-86 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) Potri.011G088500 [exp] 198 / 3e-64 AT5G55510 252 / 1e-85 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) Potri.001G281200 [exp] 54 / 4e-09 AT3G10110 205 / 4e-68 maternal effect embryo arrest 67, Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) Potri.009G076400 [exp] 52 / 2e-08 AT3G10110 194 / 1e-63 maternal effect embryo arrest 67, Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) Potri.012G004600 [exp] 42 / 9e-05 AT5G24650 262 / 2e-87 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) Potri.015G000600 [exp] 40 / 0.0008 AT5G24650 300 / 6e-103 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02466 [flax] [poplar] Tim17 Tim17/Tim22/Tim23/Pmp24 family
Representative CDS sequence Show only first row Show all	>Lus10032577 pacid=23146257 polypeptide=Lus10032577 locus=Lus10032577.g ID=Lus10032577.BGIv1.0 annot-version=v1.0 ATGGCGACAACGGCGGATTCCCCAAACCCTGATTCCGACCTCCCTGGTTCTAGTGAAAACCCTACCTCTGCTCCTCCATCTACTCCTCCCTCCTCCGCCA TCATCCCATCCAGTCCTTCCGTCTGCCTATTTGGGTTCGCTACCGAGTCCGCCGGTGGCGCATTGATAGGCTCCATCTTCGGCTTCGGTTCTGGTTTAGT TCGAAAGAAAGGCTTTAAGGGATCTCTTGCGGAGGCCGGTTCTCATGCCAAGACATTTGCTCTTCTGTCTGGAGTACACAGCTTGGTTATATGCTTTTTG AGGAGGCTACGTGGGAAGGATGATGTCATCAATGCTGGTGTGGCTGGGTGTTGTACTGGTCTTGCTTTGAGCTTCCCAGGTACACCTCAGGCTCTGTTGC AGAACTGTGTGACGTTTGGAGCATTCTCGTTTATCACTGAAGGGCTCAACAAGCGGCAGACAGCACTTGCAGCTCAACCATTTTCCGGAAACCATCGCGC ACCTCGTTCCCTTGCCCTACCTCTCGCGGTTCCACTTCCTGAGGAACTAAACCAGGCCTTCTCTTTCTTCCGTGATTCCTTGAGGAAGCTGAATCATCGG AAGTCGCCGCCTTGGAGTGCCTGA
AA sequence Show only first row Show all	>Lus10032577 pacid=23146257 polypeptide=Lus10032577 locus=Lus10032577.g ID=Lus10032577.BGIv1.0 annot-version=v1.0 MATTADSPNPDSDLPGSSENPTSAPPSTPPSSAIIPSSPSVCLFGFATESAGGALIGSIFGFGSGLVRKKGFKGSLAEAGSHAKTFALLSGVHSLVICFL RRLRGKDDVINAGVAGCCTGLALSFPGTPQALLQNCVTFGAFSFITEGLNKRQTALAAQPFSGNHRAPRSLALPLAVPLPEELNQAFSFFRDSLRKLNHR KSPPWSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26670			Mitochondrial import inner mem...		Lus10032577 [exp]	0	1
AT2G47450		CPSRP43, CAO	CHLOROPLAST SIGNAL RECOGNITION...		Lus10025111 [exp]	2.4	0.7925
AT5G54855			Pollen Ole e 1 allergen and ex...		Lus10003874 [exp]	4.2	0.7523
AT3G18790			unknown protein		Lus10008882 [exp]	7.3	0.7060
AT1G15710			prephenate dehydrogenase famil...		Lus10023121 [exp]	8.2	0.8246
AT1G51450		ASH2R, TRO	ARABIDOPSIS Ash2 RELATIVE, TRA...		Lus10027355 [exp]	9.4	0.7971
AT2G48010		RKF3	receptor-like kinase in in flo...		Lus10042679 [exp]	10.4	0.8062
AT1G69910			Protein kinase superfamily pro...		Lus10036691 [exp]	11.1	0.8018
AT1G24270			unknown protein		Lus10003131 [exp]	12.2	0.7687
AT1G27050	HD	ATHB54	homeobox protein 54 (.1)		Lus10036708 [exp]	16.2	0.7660
AT1G14060			GCK domain-containing protein ...		Lus10037148 [exp]	17.5	0.7330

Compare expression of checked genes

Lus10032577 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.