Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55530 377 / 1e-129 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) AT1G50570 324 / 6e-109 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT5G12300 218 / 1e-67 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043169 [exp] 505 / 0 AT5G55530 274 / 4e-90 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) Lus10003765 [exp] 441 / 4e-154 AT5G55530 451 / 1e-157 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) Lus10016592 [exp] 173 / 3e-51 AT5G55530 152 / 5e-43 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) Lus10009692 [exp] 171 / 7e-50 AT5G12300 264 / 4e-86 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10036036 [exp] 110 / 4e-27 AT5G12300 192 / 9e-58 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10009693 [exp] 56 / 5e-10 AT5G12300 71 / 4e-16 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10001346 [exp] 56 / 8e-09 AT5G12300 72 / 9e-15 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G088400 [exp] 396 / 1e-136 AT5G55530 418 / 9e-145 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) Potri.001G361100 [exp] 393 / 3e-135 AT5G55530 431 / 2e-149 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) Potri.009G070400 [exp] 202 / 6e-61 AT5G12300 283 / 2e-92 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.001G275800 [exp] 200 / 6e-60 AT5G12300 285 / 7e-93 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain
Representative CDS sequence Show only first row Show all	>Lus10032578 pacid=23146400 polypeptide=Lus10032578 locus=Lus10032578.g ID=Lus10032578.BGIv1.0 annot-version=v1.0 ATGGATTCTCCGCAATCAGTTGTGTCCCCATATAAGACAGCTGAGCAGGAGAAGCAAAAAACCGACGAGCATTCTGAAACAAATGGAAAGCTCGATGAAA ATTTCATCGGTGTGCTCGAAGTTTATGTACACCAAGCTAGGGACATCCACAACATATGCATCTACCACAAACAAGATGTTTACGCCAAGATTAGTCTCAC CAGCGATCCTGAACACACCACCGTCTCCACCAACACCATCAACGGAGGCGGTAGGAATCCCGTGTTCAATGAGAATCTTCGAATCAACATGAGCACACTC GACTGCTCGCTGAAATGCGAGATATTCATGATGAGTCGGGTGAAGAATTACCTTGAGGACCAGCTGTTGGGGTTTGCTCTGGTTCCTTTGTCTCAAGTAT TTATGATGAAGAATTGGAAGTTGGAAAAAAAAGAGTTCTCTCTTTCTTCCACCGATATGTTCCATTCGCCTGCTGGATATGTTCAGCTTTCCCTTTGTTA TAATGGAGCTCCACCCGAGGTCATGCCGATTCCTGCATTGCCTGCTACAGTTGGAATCATGGAGTTGTCACAAGAATCATTTCAAGGTGAACTCGACAAG CTCGAGTTTCCGGATCCTAACATTGCAAATGAAAACCAGATGATGGTTTCTGAGTATTTTGAGTTTCCGTCTAGCGATCTTGAATCCCAAACCTCCGAGT CATTGGTCAATTCTGCAAGAGTCTCGTGTTCTTCGAATGGTGTGAGCTCGGAAATCTCTAAGGCCCCAAAGGCCTCCGAAACTGTGTTTGGAGAAGAGAA CTCGGTCTGCAAAGACAAGGAAACTGTAGATGATGGTGCAAATGGCGAAAACTATTCATCATCAAGGGAAGAAGTTACGAAACGAGTTATTGAGGTGGAC ATTGAGCCACAAAAGAAGGGGTTTGAGCAGGACATAGTTGAGATGTACATGAAGAGCATGCAGCAATTCACGGAGTCATTGGCTAAGATGAAACTTCCTC TGGATATTGATAACAGTGGGGGTCCGCGGAGTTCGGCAAGTTCAACAAGCTCTGAGCAGAAAACACCCTCATCAGCTAATAAAGCTTCTTCCCGAGTGTT TTATGGGAGCAGGGCTTTCTTCTGA
AA sequence Show only first row Show all	>Lus10032578 pacid=23146400 polypeptide=Lus10032578 locus=Lus10032578.g ID=Lus10032578.BGIv1.0 annot-version=v1.0 MDSPQSVVSPYKTAEQEKQKTDEHSETNGKLDENFIGVLEVYVHQARDIHNICIYHKQDVYAKISLTSDPEHTTVSTNTINGGGRNPVFNENLRINMSTL DCSLKCEIFMMSRVKNYLEDQLLGFALVPLSQVFMMKNWKLEKKEFSLSSTDMFHSPAGYVQLSLCYNGAPPEVMPIPALPATVGIMELSQESFQGELDK LEFPDPNIANENQMMVSEYFEFPSSDLESQTSESLVNSARVSCSSNGVSSEISKAPKASETVFGEENSVCKDKETVDDGANGENYSSSREEVTKRVIEVD IEPQKKGFEQDIVEMYMKSMQQFTESLAKMKLPLDIDNSGGPRSSASSTSSEQKTPSSANKASSRVFYGSRAFF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55530			Calcium-dependent lipid-bindin...		Lus10032578 [exp]	0	1
AT3G22560			Acyl-CoA N-acyltransferases (N...		Lus10039343 [exp]	1.0	0.8075
AT1G16740			Ribosomal protein L20 (.1)		Lus10006327 [exp]	5.3	0.7635
AT1G16350			Aldolase-type TIM barrel famil...		Lus10000276 [exp]	8.9	0.7362
AT1G66510			AAR2 protein family (.1.2.3)		Lus10009118 [exp]	38.4	0.7350
AT4G17880	bHLH	bHLH004, MYC4	Basic helix-loop-helix (bHLH) ...		Lus10004575 [exp]	42.1	0.7268
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Lus10033102 [exp]	56.2	0.7197
AT4G31130			Protein of unknown function (D...		Lus10030037 [exp]	64.4	0.7074
					Lus10010420 [exp]	72.5	0.6707
AT3G51990			Protein kinase superfamily pro...		Lus10015478 [exp]	76.5	0.6806
AT1G04130		TPR2, AtTPR2	tetratricopeptide repeat 2, Te...		Lus10025945 [exp]	77.7	0.6690

Compare expression of checked genes

Lus10032578 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.