Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26640 357 / 4e-120 WRKY ATWRKY20, WRKY20 WRKY family transcription factor family protein (.1.2) AT2G38470 247 / 5e-77 WRKY ATWRKY33, WRKY33 WRKY DNA-binding protein 33 (.1) AT5G07100 222 / 4e-71 WRKY WRKY26 WRKY DNA-binding protein 26 (.1.2) AT2G03340 231 / 5e-71 WRKY WRKY3 WRKY DNA-binding protein 3 (.1) AT1G13960 229 / 4e-70 WRKY WRKY4 WRKY DNA-binding protein 4 (.1.2) AT4G26440 230 / 7e-70 WRKY ATWRKY34, MSP3, WRKY34 MICROSPORE-SPECIFIC PROMOTER 3, WRKY DNA-binding protein 34 (.1) AT3G01080 222 / 2e-68 WRKY ATWRKY58, WRKY58 WRKY DNA-binding protein 58 (.1) AT2G30250 207 / 3e-63 WRKY ATWRKY25, WRKY25 WRKY DNA-binding protein 25 (.1) AT2G04880 200 / 1e-59 WRKY ATWRKY1, ZAP1 zinc-dependent activator protein-1 (.1.2) AT2G37260 175 / 2e-51 WRKY DSL1, ATWRKY44, TTG2 TRANSPARENT TESTA GLABRA 2, DR. STRANGELOVE 1, WRKY family transcription factor family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043167 [exp] 597 / 0 AT4G26640 473 / 9e-163 WRKY family transcription factor family protein (.1.2) Lus10016595 [exp] 455 / 3e-157 AT4G26640 556 / 0.0 WRKY family transcription factor family protein (.1.2) Lus10003769 [exp] 333 / 4e-109 AT4G26640 524 / 0.0 WRKY family transcription factor family protein (.1.2) Lus10032887 [exp] 270 / 9e-84 AT5G56270 540 / 0.0 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Lus10006368 [exp] 257 / 8e-81 AT2G04880 283 / 5e-90 zinc-dependent activator protein-1 (.1.2) Lus10001265 [exp] 256 / 3e-80 AT2G38470 394 / 2e-132 WRKY DNA-binding protein 33 (.1) Lus10012322 [exp] 252 / 4e-80 AT2G04880 278 / 2e-89 zinc-dependent activator protein-1 (.1.2) Lus10012215 [exp] 256 / 5e-80 AT2G38470 393 / 2e-131 WRKY DNA-binding protein 33 (.1) Lus10026634 [exp] 247 / 1e-77 AT1G13960 409 / 1e-139 WRKY DNA-binding protein 4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G361600 [exp] 416 / 2e-142 AT4G26640 540 / 0.0 WRKY family transcription factor family protein (.1.2) Potri.011G087900 [exp] 411 / 2e-140 AT4G26640 555 / 0.0 WRKY family transcription factor family protein (.1.2) Potri.011G169300 [exp] 266 / 4e-82 AT5G56270 588 / 0.0 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Potri.019G123500 [exp] 263 / 5e-82 AT2G38470 299 / 3e-94 WRKY DNA-binding protein 33 (.1) Potri.013G153400 [exp] 258 / 2e-80 AT2G38470 329 / 5e-106 WRKY DNA-binding protein 33 (.1) Potri.016G128300 [exp] 252 / 2e-78 AT2G38470 377 / 8e-125 WRKY DNA-binding protein 33 (.1) Potri.006G105300 [exp] 251 / 2e-78 AT2G38470 341 / 4e-111 WRKY DNA-binding protein 33 (.1) Potri.001G472800 [exp] 255 / 4e-78 AT5G56270 585 / 0.0 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Potri.014G164300 [exp] 248 / 8e-78 AT2G04880 280 / 5e-89 zinc-dependent activator protein-1 (.1.2) Potri.013G086000 [exp] 250 / 3e-76 AT5G56270 299 / 3e-91 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10032580 pacid=23146359 polypeptide=Lus10032580 locus=Lus10032580.g ID=Lus10032580.BGIv1.0 annot-version=v1.0 ATGCAATCCTATGGCACTTCTCAGTCCCAAATCCAATCAGTTTCATCCTTGTCTTCACCTAAGGCTGAGATGGTCACTACCTCAAATGAGTTGCGTCTAA ATCCTCTTCATATGGTTTCTTCTGGAGCTACTGCACCAGTTCAAGATGAAGCTGAAGAACAAAACCAGATAGGAAATGCTAACAGTGGCACAACGAATTC AATGATATCAGATGATGGATATCACTGGCGTAAATATGGACAGAAACATGTGAAAGGAAGTGAATTTCCTCGCAGCTACTACAAATGTACACATCCCAAT TGTGAGGTAAAGAAGTTATTTGAACGCTCTCATGAGGGAAAAATTACAGATATTATCTATAAGGGCACACATGACCATCCTAAACCTCAAATCAGTCGCC GTTACACTACTGTAGGCCTTTTTCCCGTGCAAGAAGGAACACCTGATGCGTCCCACACAACAGGAAAAAATGGAGGTACTCTTGAACTATCCCTTGTTGC AGCAACTGGTGAAATTCTAGAAGGTCCTGAAGATGATGAGGACCCCTTCTTTTCAAAGCGCAGGAAAATGGATAGTGCTAGTTTTGATGTCACCCCAGTG GCTGTCAAGCCTATCCGTGAACCACGAGTTGTTGTTCAGACTCTTAGTGAGGTTGACATACTTGATGACGGCTACAAATGGCGCAAATATGGGCAGAAAG TAGTGAGAGGAAATCCTAATCCGAGGAGTTACTACAAGTGCACAAATGTTGGGTGCCCGGTGAGAAAGCATGTAGAGAGGGCATCACATGATCTGAAAGC TGTTATAACTACTTACGAAGGAAAACACAACCATGATGTACCCACAGCAAGGACTAGCAGTAATGCAGCAGCAGGAGGCTCTGCGGCTATAATGAGCAGT CGATTGAGAATCAGATCAGACGAAAGCGAAACGATCAGCCTTGATCTCGGAGTTGGTATGTATTCTGAATCTAGTGACCACCAGCAACAACCTCTTCTCT CCCAAAATGGGCAGAGCAGTGGGTCTAGTTTCAGCAGAGCTGCAAATCACCATGGCGTTCACATGAACCAGTATGTTTCTGGACAAACTCCGAATGAAGC GCGTAGTGTTGGTCTCCGAGCTCTGAAGCATCGATTTTCTTACCATTATCCACCAAACGCGGGAACATTACTAAGTGGTCCTTGA
AA sequence Show only first row Show all	>Lus10032580 pacid=23146359 polypeptide=Lus10032580 locus=Lus10032580.g ID=Lus10032580.BGIv1.0 annot-version=v1.0 MQSYGTSQSQIQSVSSLSSPKAEMVTTSNELRLNPLHMVSSGATAPVQDEAEEQNQIGNANSGTTNSMISDDGYHWRKYGQKHVKGSEFPRSYYKCTHPN CEVKKLFERSHEGKITDIIYKGTHDHPKPQISRRYTTVGLFPVQEGTPDASHTTGKNGGTLELSLVAATGEILEGPEDDEDPFFSKRRKMDSASFDVTPV AVKPIREPRVVVQTLSEVDILDDGYKWRKYGQKVVRGNPNPRSYYKCTNVGCPVRKHVERASHDLKAVITTYEGKHNHDVPTARTSSNAAAGGSAAIMSS RLRIRSDESETISLDLGVGMYSESSDHQQQPLLSQNGQSSGSSFSRAANHHGVHMNQYVSGQTPNEARSVGLRALKHRFSYHYPPNAGTLLSGP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26640	WRKY	ATWRKY20, WRKY2...	WRKY family transcription fact...		Lus10032580 [exp]	0	1
AT5G66200		ARO2	armadillo repeat only 2 (.1)		Lus10037086 [exp]	4.9	0.8359
AT3G25290			Auxin-responsive family protei...		Lus10000915 [exp]	6.8	0.8918
AT4G23410		TET5	tetraspanin5 (.1)		Lus10041411 [exp]	7.5	0.8713
AT2G26695			Ran BP2/NZF zinc finger-like s...		Lus10030054 [exp]	8.0	0.8042
AT3G04120		GAPC1, GAPC-1, ...	glyceraldehyde-3-phosphate deh...		Lus10014603 [exp]	8.4	0.7774
AT3G16360		AHP4	HPT phosphotransmitter 4 (.1.2...		Lus10038280 [exp]	9.2	0.8481
AT2G46660		CYP78A6	"cytochrome P450, family 78, s...		Lus10005995 [exp]	10.2	0.8157
AT5G14530			Transducin/WD40 repeat-like su...		Lus10032128 [exp]	11.1	0.7558
AT4G35270		NLP2	Plant regulator RWP-RK family ...		Lus10014428 [exp]	12.7	0.8363
AT3G61760		ADL1B	DYNAMIN-like 1B (.1)		Lus10004007 [exp]	18.2	0.8347

Compare expression of checked genes

Lus10032580 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.