Plant FIBer expression Database

Lus10032581 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G16447 40 / 8e-05 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10043166
[exp]
214 / 7e-73 ND 40 / 6e-05
Lus10004411
[exp]
107 / 2e-30 ND 37 / 9e-04
Lus10004778
[exp]
62 / 3e-13 ND /
Lus10006375
[exp]
44 / 8e-06 ND 42 / 4e-05
Lus10012330
[exp]
43 / 1e-05 ND 40 / 2e-04
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G362000
[exp]
87 / 6e-23 AT4G16447 50 / 8e-09 unknown protein
Potri.011G086300
[exp]
59 / 5e-12 AT4G16447 40 / 6e-05 unknown protein
Potri.006G016500
[exp]
54 / 5e-10 AT4G16447 46 / 5e-07 unknown protein
Potri.014G165000
[exp]
50 / 1e-08 AT4G16447 43 / 5e-06 unknown protein
Potri.016G009200
[exp]
44 / 2e-06 AT4G16447 44 / 2e-06 unknown protein
PFAM info
Representative CDS sequence
>Lus10032581 pacid=23146304 polypeptide=Lus10032581 locus=Lus10032581.g ID=Lus10032581.BGIv1.0 annot-version=v1.0
ATGGATAGGGAAAGCTCTACTGAACCAACCATCGCAAAGTCTTCCTCCATTGCATTGCTTCAGGAGAGGTTTCGGAAGCTAGAACGAGCACGGGAGATGA
GGCAACAGAGGCAGTTATTCCGAGTCCTTGCTGAGGCCGGCCACGAGAAATCAGATGCATCATCGCCTTCCATTTACTTCCAGGGCTCCCAACCCATCGT
TCCAGACAAAAAACCACTCAGAGACTCATCTCTGCATCTGCAATATCCAACAATGCAGCTGGGACAATATGCTGGGTTTGGAGTCGACGACATCCCCAAT
TTGGCAAATCTTCACTCCTCAAATCATGTTCTAATGCACAGTACTGATGATCAATACAAATGTGATATTGAATCAGATGTTGATACCTCTCTTCATCTCT
GA
AA sequence
>Lus10032581 pacid=23146304 polypeptide=Lus10032581 locus=Lus10032581.g ID=Lus10032581.BGIv1.0 annot-version=v1.0
MDRESSTEPTIAKSSSIALLQERFRKLERAREMRQQRQLFRVLAEAGHEKSDASSPSIYFQGSQPIVPDKKPLRDSSLHLQYPTMQLGQYAGFGVDDIPN
LANLHSSNHVLMHSTDDQYKCDIESDVDTSLHL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10032581
[exp]
0 1
AT5G19060 unknown protein Lus10026459
[exp]
1.0 0.8790
AT1G62400 HT1 high leaf temperature 1, Prote... Lus10020018
[exp]
2.4 0.8691
AT1G24625 C2H2ZnF ZFP7 zinc finger protein 7 (.1) Lus10003681
[exp]
4.0 0.8258
AT1G77690 LAX3 like AUX1 3 (.1) Lus10028078
[exp]
5.2 0.8288
AT1G73040 Mannose-binding lectin superfa... Lus10006866
[exp]
6.2 0.7620
Lus10039994
[exp]
7.7 0.7908
AT3G09060 Pentatricopeptide repeat (PPR)... Lus10000015
[exp]
17.5 0.7283
AT5G64350 FKP12, ATFKBP12... ARABIDOPSIS THALIANA FK506-BIN... Lus10016586
[exp]
18.8 0.7828
AT1G55840 Sec14p-like phosphatidylinosit... Lus10022533
[exp]
19.4 0.8229
AT5G06060 NAD(P)-binding Rossmann-fold s... Lus10040731
[exp]
19.6 0.7634

Lus10032581 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.