Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55880 583 / 0 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1.2) AT5G28030 116 / 5e-29 DES1 L-cysteine desulfhydrase 1 (.1.2) AT5G28020 112 / 1e-27 ATCYSD2 cysteine synthase D2 (.1.2.3.4.5.6) AT3G04940 106 / 2e-25 ATCYSD1 cysteine synthase D1 (.1) AT4G14880 102 / 3e-24 OLD3, CYTACS1, OASA1, ATCYS-3A ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) AT2G43750 102 / 1e-23 CPACS1, ATCS-B, OASB CHLOROPLAST O-ACETYLSERINE SULFHYDRYLASE 1, ARABIDOPSIS THALIANA CYSTEIN SYNTHASE-B, ARABIDOPSIS CYSTEINE SYNTHASE 1, O-acetylserine (thiol) lyase B (.1), O-acetylserine (thiol) lyase B (.2) AT3G61440 100 / 7e-23 ATCYSC1, ARATH;BSAS3;1 BETA-SUBSTITUTED ALA SYNTHASE 3;1, cysteine synthase C1 (.1.2.3) AT3G59760 97 / 1e-21 ATCS-C, OASC ARABIDOPSIS THALIANA CYSTEINSYNTHASE-C, O-acetylserine (thiol) lyase isoform C (.1), O-acetylserine (thiol) lyase isoform C (.2), O-acetylserine (thiol) lyase isoform C (.3) AT3G03630 90 / 2e-19 CS26 cysteine synthase 26 (.1) AT3G22460 86 / 3e-18 OASA2 O-acetylserine (thiol) lyase (OAS-TL) isoform A2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043164 [exp] 815 / 0 AT1G55880 625 / 0.0 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1.2) Lus10019002 [exp] 117 / 4e-29 AT4G14880 461 / 2e-164 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Lus10014765 [exp] 102 / 9e-24 AT3G61440 577 / 0.0 BETA-SUBSTITUTED ALA SYNTHASE 3;1, cysteine synthase C1 (.1.2.3) Lus10019003 [exp] 98 / 2e-22 AT4G14880 508 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Lus10015947 [exp] 97 / 4e-22 AT4G14880 509 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Lus10025589 [exp] 96 / 4e-21 AT3G59760 536 / 0.0 ARABIDOPSIS THALIANA CYSTEINSYNTHASE-C, O-acetylserine (thiol) lyase isoform C (.1), O-acetylserine (thiol) lyase isoform C (.2), O-acetylserine (thiol) lyase isoform C (.3) Lus10027056 [exp] 95 / 4e-21 AT3G59760 533 / 0.0 ARABIDOPSIS THALIANA CYSTEINSYNTHASE-C, O-acetylserine (thiol) lyase isoform C (.1), O-acetylserine (thiol) lyase isoform C (.2), O-acetylserine (thiol) lyase isoform C (.3) Lus10009521 [exp] 86 / 1e-17 AT3G03630 432 / 2e-150 cysteine synthase 26 (.1) Lus10036370 [exp] 78 / 1e-15 AT3G61440 471 / 8e-168 BETA-SUBSTITUTED ALA SYNTHASE 3;1, cysteine synthase C1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G367000 [exp] 649 / 0 AT1G55880 605 / 0.0 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1.2) Potri.013G035200 [exp] 117 / 1e-29 AT4G14880 423 / 2e-149 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.005G048132 [exp] 115 / 1e-28 AT3G04940 402 / 5e-141 cysteine synthase D1 (.1) Potri.005G048200 [exp] 115 / 2e-28 AT3G04940 429 / 6e-152 cysteine synthase D1 (.1) Potri.005G048066 [exp] 113 / 7e-28 AT3G04940 409 / 3e-144 cysteine synthase D1 (.1) Potri.005G048700 [exp] 104 / 1e-24 AT4G14880 508 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.013G035500 [exp] 104 / 1e-24 AT4G14880 509 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.008G153300 [exp] 103 / 1e-24 AT4G14880 482 / 6e-173 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.005G048400 [exp] 103 / 2e-24 AT4G14880 504 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.014G086300 [exp] 102 / 1e-23 AT3G61440 570 / 0.0 BETA-SUBSTITUTED ALA SYNTHASE 3;1, cysteine synthase C1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00291 [flax] [poplar] PALP Pyridoxal-phosphate dependent enzyme
Representative CDS sequence Show only first row Show all	>Lus10032583 pacid=23146410 polypeptide=Lus10032583 locus=Lus10032583.g ID=Lus10032583.BGIv1.0 annot-version=v1.0 ATGATGGGACCTGGAGGGATACCTAATGTTGCAGTTATGGCGGCTATCTCCGTCTCCACGGTGGTCTTCTCTTACTGTCTCTGCTGCTACTGGTCCACCG GCAGAGCTCCTTGTTCGTCGGAGAAGCAAAAGAAGAAAGGCAGAAATGGAGTTGTGGATGCAATTGGGAACACTCCGTTGATAAGAATCAACAGCTTGTC TGACGCCACCGGCTGTGAAATTCTAGGGAAGTGCGAATTTCTGAATCCCGGCGGGAGTGTCAAGGACAGAGTTGCAGTTAAAATCATTGAAGAAGCGTTG GAATCAGGTAAGCTTACTAGGGGTGGAGTTGTGAGAGAGGGAAGCGCCGGGAGTACTGCTATTAGCTTAGCAACTGTTGCTCCTTCCTATGGCTGCAAAT GCCATGTTGTTATCCCTGATGATGCTGCTATTGAGAAGTCTCAAATTCTGGAAGCACTGGGGGCAACGGTTGAAAGAGTGAGGCCAGTTTCAATTACACA TAGAGACCACTATGTTAACATTGCAAGGAAACGGGCAGTTGAAGCTAATGAATTTGCTGCAAAGCTCAGGAAAATTGCTGAAGTTGAGGGTAAAGACATC ACCCAAGTTGAAGGTTATGAAACTGAGGGAAAGAAGCAAGATTCAGTTGTCTGCATGCCATACTACGGTAATGGTGGTTTCTTTGCTGATCAGTTTGAAA ATTTGGCAAATTTCAGGGCCCATTATGTGGGCACTGGACCTGAGATATGGGAGCAAACTGGTGGTGCCTTAGATGCATTTGTAGCAGCTGCAGGCACTGG TGGCACTGTAGCTGGTGTTTCCACATTTCTCCAGGTTTCTATTGCGCTATATGATCACTTACCTTTACTGAATGCTCCAGTCATTTCATCTCAAGCAAAT CAAAACTCTCTGCAGGAGAAGAGTCCTAATGTGAAATGCTTCCTGATAGATCCTCCTGGTTCTGGTTTGTTTAATAAAGTAACTAGAGGGGTAATGTACA CCAACGAGGAAGCTGAAGGAAAGAGGCTAAAGAACCCATTCGACACAGTTACCGAAGGGATCGGAATCAATAGATTGACAAAGAATTTCTCGATGGCTAA ACTTGATGGTGCTTTCCGAGGCACAGATAAGGAAGCTGTCGAGATGTCTAGGTTTCTTGTTCTGAAGGACGGCCTGTTTCTCGGTAGTTCTTCAGCTATG AATTGCGTTGGTGCTGTCAGAGTGGCGCAGTCGCTCGGACCGGGTCACACCATTGTAACCATTCTTTGTGATAGTGGGATGAGACATTTGAGTAAATTCT GCAACGCTCAGTATCTCTCTGAGCATGGTTTGACACCAACTGCTACTGGTTTAGAGTTCCTCGGAATCAACTGA
AA sequence Show only first row Show all	>Lus10032583 pacid=23146410 polypeptide=Lus10032583 locus=Lus10032583.g ID=Lus10032583.BGIv1.0 annot-version=v1.0 MMGPGGIPNVAVMAAISVSTVVFSYCLCCYWSTGRAPCSSEKQKKKGRNGVVDAIGNTPLIRINSLSDATGCEILGKCEFLNPGGSVKDRVAVKIIEEAL ESGKLTRGGVVREGSAGSTAISLATVAPSYGCKCHVVIPDDAAIEKSQILEALGATVERVRPVSITHRDHYVNIARKRAVEANEFAAKLRKIAEVEGKDI TQVEGYETEGKKQDSVVCMPYYGNGGFFADQFENLANFRAHYVGTGPEIWEQTGGALDAFVAAAGTGGTVAGVSTFLQVSIALYDHLPLLNAPVISSQAN QNSLQEKSPNVKCFLIDPPGSGLFNKVTRGVMYTNEEAEGKRLKNPFDTVTEGIGINRLTKNFSMAKLDGAFRGTDKEAVEMSRFLVLKDGLFLGSSSAM NCVGAVRVAQSLGPGHTIVTILCDSGMRHLSKFCNAQYLSEHGLTPTATGLEFLGIN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55880			Pyridoxal-5'-phosphate-depende...		Lus10032583 [exp]	0	1
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10020016 [exp]	10.0	0.8716
AT5G03700			D-mannose binding lectin prote...		Lus10014371 [exp]	11.7	0.9074
AT1G11780			oxidoreductase, 2OG-Fe(II) oxy...		Lus10015782 [exp]	12.4	0.8850
AT5G54850			unknown protein		Lus10011150 [exp]	12.9	0.8953
AT4G36740	HD	HB-5, ATHB40	homeobox protein 40 (.1)		Lus10041719 [exp]	17.0	0.8949
AT5G20350		TIP1	TIP GROWTH DEFECTIVE 1, Ankyri...		Lus10038108 [exp]	17.3	0.8809
AT5G27400			S-adenosyl-L-methionine-depend...		Lus10015166 [exp]	17.3	0.8893
AT5G50950		FUM2	FUMARASE 2 (.1.2.3)		Lus10032296 [exp]	19.1	0.8773
AT1G53200			unknown protein		Lus10030239 [exp]	21.4	0.8593
AT1G11320			unknown protein		Lus10013574 [exp]	23.6	0.8948

Compare expression of checked genes

Lus10032583 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.