Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043163 [exp] 268 / 4e-92 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G367100 [exp] 51 / 1e-07 AT5G55650 / unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032584 pacid=23146218 polypeptide=Lus10032584 locus=Lus10032584.g ID=Lus10032584.BGIv1.0 annot-version=v1.0 ATGGATAAACCAGCAGCTTGGGTTGAAGGATGTTATTATTCCCTTATTTCCTTTCTCAAAAAGTACTCACCACCATTGTTTTCAGTTGCAGTGCCTTCTT CTCTGGCTATTACTCTGTTTCTCTGGTTTGGATTCTCTCATTTCCTTGTGTCAACTTCCCTTATCCTTTTCTCCACCATCTGCATTGTACATTTCTCAAA TAGGAAACTTGTCAAAGAGAAAGAAGAAGAAGCTGTTGTTGAGAAGCAGATTCAAGGATTGGAAGCTGTGGATGAGTATGAAGTGGAGTCCACTGAGTTC CCATTAGATGGCGAGAGCAGTGATGATTCTCCAAGGAATGAGGGTTTCCAACTCAACTGGAAGATGCCCTTTAACAATGTCATCAGCCAAAGTTTACCAA TCTGTGAAAGTGAAGAAGAAGATGATGATGATGGTGATCATCTCATTGAGATCAGTCTTCCACCAATTAATGAAAGCAATTCTGTCTATGACACTTCGTC GAAGCGAATGTTGTCTCCTCAGTCCGACATCTTCAGTGAAGAAGAAGAAGGGATGATGGAGCTGATGGAAGAAATGGATGAGGCCAGTGAGGAAGACAAC CTCATAGAGATTGACCTCGCCATTGGCTCCATCAAGAACTCCAATTTCGATTTTGAGCTATAA
AA sequence Show only first row Show all	>Lus10032584 pacid=23146218 polypeptide=Lus10032584 locus=Lus10032584.g ID=Lus10032584.BGIv1.0 annot-version=v1.0 MDKPAAWVEGCYYSLISFLKKYSPPLFSVAVPSSLAITLFLWFGFSHFLVSTSLILFSTICIVHFSNRKLVKEKEEEAVVEKQIQGLEAVDEYEVESTEF PLDGESSDDSPRNEGFQLNWKMPFNNVISQSLPICESEEEDDDDGDHLIEISLPPINESNSVYDTSSKRMLSPQSDIFSEEEEGMMELMEEMDEASEEDN LIEIDLAIGSIKNSNFDFEL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G04480			unknown protein		Lus10032584 [exp]	0	1
					Lus10016903 [exp]	1.0	0.9643
AT5G60640		ATPDI2, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10041307 [exp]	4.9	0.9311
AT3G53420		PIP2;1, PIP2A	PLASMA MEMBRANE INTRINSIC PROT...		Lus10036531 [exp]	6.2	0.9241
AT2G33850			unknown protein		Lus10015406 [exp]	7.2	0.8905
AT2G17800		ARAC1, ATGP2, A...	RHO-RELATED GTPASES FROM PLANT...		Lus10041881 [exp]	7.5	0.8851
AT5G23400			Leucine-rich repeat (LRR) fami...		Lus10013454 [exp]	8.0	0.9500
AT3G49750		AtRLP44	receptor like protein 44 (.1)		Lus10011561 [exp]	8.0	0.9422
AT1G05420	OFP	ATOFP12, OFP12	ARABIDOPSIS THALIANA OVATE FAM...		Lus10014677 [exp]	8.1	0.9452
AT1G46480	HD	WOX4	WUSCHEL related homeobox 4 (.1...		Lus10024808 [exp]	8.5	0.9293
AT2G01610			Plant invertase/pectin methyle...		Lus10038645 [exp]	11.0	0.9253

Compare expression of checked genes

Lus10032584 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.